Name: Enterobacter hormaechei subsp. xiangfangensis 10-17
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132178

Type strain:

Species: Enterobacter hormaechei subsp. xiangfangensis

Strain Designation: 10-17

Culture col. no.: DSM 101093, CCUG 62994, LMG 27195, NCIMB 14836

Strain history: <- T. Hain, Justus-Liebig-Universität, Giessen, Germany <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany <- C. T. Gu, Northeast Agricultural Univ., Harbin, China; 10-17

NCBI tax ID(s): 1296536 (subspecies)

SI-ID 381219

LMG 27195, NCIMB 14836, CCUG 62994, CCM 8608, DSM 101093

Other strains from Enterobacter hormaechei subsp. xiangfangensis

E. hormaechei subsp. xiangfangensis 1080M, DSM 46348, IMET 11388
E. hormaechei subsp. xiangfangensis CCUG 31433
E. hormaechei subsp. xiangfangensis CCUG 60952

Section

Enterobacter hormaechei subsp. xiangfangensis 10-17 is an aerobe, mesophilic bacterium that was isolated from Sourdough.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Enterobacter*
	Species	**Enterobacter hormaechei subsp. xiangfangensis**
	Full Scientific Name (LPSN)	Enterobacter hormaechei subsp. xiangfangensis (Gu et al. 2014) Sutton et al. 2018

Synonym

Enterobacter xiangfangensis

Information on morphological and physiological properties Morphology

[Ref.: #62929]

Incubation period

1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23967]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #23967]

Culture medium growth

[Ref.: #23967]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23967]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23967]			growth	30 °C
[Ref.: #62929]			growth	30 °C

[Ref.: #23967]	Temperature range	mesophilic
[Ref.: #62929]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62929]

Oxygen tolerance

aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	nitrate ChEBI	+	reduction	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	dinitrogen ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E
[Ref.: #68368]	nitrite ChEBI	yes	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #23967]	17776	+	+	-	-	+	-	-	-	-	+	-	+	+	-	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #23967]	16871	+	+	-	-	+/-	-	-	-	-	+	-	+	+	-	+	+	+	+	+	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23967]	Sample type/isolated from	Sourdough
[Ref.: #23967]	Geographic location (country and/or sea, region)	Heilongjiang Province
[Ref.: #23967]	Country	China
[Ref.: #23967]	Country ISO 3 Code	CHN
[Ref.: #23967]	Continent	Asia

[Ref.: #62929]	Sample type/isolated from	Sourdough
[Ref.: #62929]	Sampling date	2010-06-01
[Ref.: #62929]	Geographic location (country and/or sea, region)	Heilongjiang province
[Ref.: #62929]	Country	China
[Ref.: #62929]	Country ISO 3 Code	CHN
[Ref.: #62929]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HF679035 (>99% sequence identity) for Enterobacteriaceae from Microbeatlas

Aquatic Samples	1353
Soil Samples	615
Animal Samples	10132
Plant Samples	1234
Total Samples	13334

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23967]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23967]	Enterobacter xiangfangensis partial 16S rRNA gene, type strain 10-17T	HF679035	1429	ENA	1296536 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Enterobacter hormaechei subsp. xiangfangensis LMG27195	GCA_001729785	complete	GenBank	1296536 tax ID	*
[Ref.: #66792]	Enterobacter xiangfangensis strain LMG27195	1296536.16	complete	PATRIC	1296536 tax ID	*
[Ref.: #66792]	Enterobacter hormaechei xiangfangensis LMG 27195	2718217756	complete	JGI IMG/M	1296536 tax ID	*

[Ref.: #23967]

GC-content

55.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Enterobacter hormaechei subsp. xiangfangensis LMG27195 NCBI: GCA_001729785.1
[Ref.: #69480]	flagellated	no	67.026	no
[Ref.: #69480]	gram-positive	no	97.949	no
[Ref.: #69480]	anaerobic	no	95.876	no
[Ref.: #69480]	aerobic	yes	86.365	yes
[Ref.: #69480]	halophile	no	85.111	no
[Ref.: #69480]	spore-forming	no	92.504	no
[Ref.: #69480]	thermophile	no	99.429	no
[Ref.: #69480]	glucose-util	yes	95.46	no
[Ref.: #69480]	motile	yes	87.9	no
[Ref.: #69480]	glucose-ferment	yes	93.311	yes

Availability in culture collections External links

[Ref.: #23967]

Culture collection no.

DSM 101093, CCUG 62994, LMG 27195, NCIMB 14836

[Ref.: #90533]

SI-ID 381219

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Enterobacter xiangfangensis sp. nov., isolated from Chinese traditional sourdough, and reclassification of Enterobacter sacchari Zhu et al. 2013 as Kosakonia sacchari comb. nov.	Gu CT, Li CY, Yang LJ, Huo GC	Int J Syst Evol Microbiol	10.1099/ijs.0.064709-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23967

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101093

#62929 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62994

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90533

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID381219.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Enterobacter hormaechei subsp. xiangfangensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Enterobacter hormaechei subsp. xiangfangensis LMG27195

Change proposal

Change proposal