Name: Glycomyces fuscus DSM 103381
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132175

Type strain:

Species: Glycomyces fuscus

Culture col. no.: DSM 103381, CCTCC AA 2013003, KACC 17682, NRRL B-59998, TRM 49117, JCM 31745

Strain history: CCTCC AA 2013003 <-- L.-L. Zhang; Tarim Univ., China; TRM 49117.

NCBI tax ID(s): 1407559 (species)

SI-ID 400170

DSM 103381

Section

Glycomyces fuscus DSM 103381 is a mesophilic bacterium that was isolated from hypersaline soil sample.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Glycomycetales*
	Family	*Glycomycetaceae*
	Genus	*Glycomyces*
	Species	**Glycomyces fuscus**
	Full Scientific Name (LPSN)	Glycomyces fuscus Han et al. 2014

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

Medium 1240 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23964]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #23964]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

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Observation

quinones: MK-9(H₄), MK-9(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23964]	Sample type/isolated from	hypersaline soil sample
[Ref.: #23964]	Geographic location (country and/or sea, region)	Xinjiang Province
[Ref.: #23964]	Country	China
[Ref.: #23964]	Country ISO 3 Code	CHN
[Ref.: #23964]	Continent	Asia
[Ref.: #23964]	Geographic location	39.5833°/89.7667°

[Ref.: #67770]	Sample type/isolated from	Hypersaline soil sample from the Lop Nur salt lake
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang Province, north-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

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Global distribution of 16S sequence AB857717 (>99% sequence identity) for Glycomyces fuscus subclade from Microbeatlas

Aquatic Samples	1
Soil Samples	32
Animal Samples	27
Plant Samples	3
Total Samples	63

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23964]	Glycomyces fuscus gene for 16S ribosomal RNA, partial sequence	AB857717	1532	ENA	1407559 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Glycomyces fuscus TRM 49117	GCA_002529455	contig	GenBank	1407559 tax ID

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GC-content

72 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Glycomyces fuscus TRM 49117 NCBI: GCA_002529455.1
[Ref.: #69480]	flagellated	no	98.35	no
[Ref.: #69480]	gram-positive	yes	91.623	no
[Ref.: #69480]	anaerobic	no	99.214	no
[Ref.: #69480]	aerobic	yes	94.358	no
[Ref.: #69480]	halophile	yes	66.984	no
[Ref.: #69480]	spore-forming	yes	94.221	no
[Ref.: #69480]	thermophile	no	98.216	no
[Ref.: #69480]	glucose-util	yes	89.017	no
[Ref.: #69480]	motile	no	93.301	no
[Ref.: #69480]	glucose-ferment	no	92.385	no

Availability in culture collections External links

[Ref.: #23964]

Culture collection no.

DSM 103381, CCTCC AA 2013003, KACC 17682, NRRL B-59998, TRM 49117, JCM 31745

[Ref.: #90530]

SI-ID 400170

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Glycomyces fuscus TRM 49117, Isolated from a Hypersaline Soil Sample.	Wang Y, Luo X, Zhang L	Genome Announc	10.1128/genomeA.01258-17	2017	*
Phylogeny	Glycomyces fuscus sp. nov. and Glycomyces albus sp. nov., actinomycetes isolated from a hypersaline habitat.	Han XX, Luo XX, Zhang LL	Int J Syst Evol Microbiol	10.1099/ijs.0.061788-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23964

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103381

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90530

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400170.1 )

* These data were automatically processed and therefore are not curated

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Glycomyces fuscus TRM 49117

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