Name: Saccharopolyspora indica VRC122
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132165

Type strain:

Species: Saccharopolyspora indica

Strain Designation: VRC122

Culture col. no.: DSM 102215, ATCC BAA-2551, KCTC 29208, MCC 2206, MTCC 11564

Strain history: <- Radha vaddavalli, Department of Botany, Osmania Univ.,India

NCBI tax ID(s): 1229659 (species)

Special Collections

DSMZ
KCTC

Section

Saccharopolyspora indica VRC122 is an aerobe, spore-forming bacterium that was isolated from Callistemon citrinus rizosphere sample.

spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharopolyspora*
	Species	**Saccharopolyspora indica**
	Full Scientific Name (LPSN)	Saccharopolyspora indica Vaddavalli et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.218

Multimedia content

[Ref.: #23954]

Caption:

Medium 65 28°C

[Ref.: #23954]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67771]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %90.292

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23954]	Sample type/isolated from	Callistemon citrinus rizosphere sample
[Ref.: #23954]	Host species	Callistemon citrinus
[Ref.: #23954]	Geographic location (country and/or sea, region)	New Delhi
[Ref.: #23954]	Country	India
[Ref.: #23954]	Country ISO 3 Code	IND
[Ref.: #23954]	Continent	Asia
[Ref.: #23954]	Geographic location	28.6139°/77.2089°

[Ref.: #67771]	Sample type/isolated from	From Callistemon plant rhizosphere
[Ref.: #67771]	Country	India
[Ref.: #67771]	Country ISO 3 Code	IND
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX411621 (>99% sequence identity) for Saccharopolyspora indica subclade from Microbeatlas

Aquatic Samples	4
Soil Samples	221
Animal Samples	21
Plant Samples	7
Total Samples	253

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23954]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23954]	Saccharopolyspora indica strain VRC122 16S ribosomal RNA gene, partial sequence	JX411621	1485	GenBank ENA	1229659 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Saccharopolyspora indica KCTC 29208	GCA_027853965	contig	GenBank ENA	1229659 tax ID	*

[Ref.: #23954]

GC-content

69.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharopolyspora indica KCTC 29208 NCBI: GCA_027853965.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.218	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.917	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.292	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	87.983	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.244	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.6	no

Availability in culture collections External links

[Ref.: #23954]

Culture collection no.

DSM 102215, ATCC BAA-2551, KCTC 29208, MCC 2206, MTCC 11564

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharopolyspora maritima sp. nov., an actinomycete isolated from mangrove sediment.	Suksaard P, Srisuk N, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002941	2018	*
Phylogeny	Saccharopolyspora indica sp. nov., an actinomycete isolated from the rhizosphere of Callistemon citrinus (Curtis).	Vaddavalli R, Peddi S, Kothagauni SY, Begum Z, Gaddam B, Periketi M, Linga VR	Int J Syst Evol Microbiol	10.1099/ijs.0.057539-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23954

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102215

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Saccharopolyspora indica in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Saccharopolyspora indica KCTC 29208

Change proposal

Change proposal