Amycolatopsis orientalis (DSM 43388, CIP 109149, IMRU 1390)

Name: Amycolatopsis orientalis (DSM 43388, CIP 109149, IMRU 1390)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13216

Type strain

Strain Designation N858, W-113/66

Culture col. no. DSM 43388 CIP 109149 IMRU 1390 N858 W-113/66

NCBI tax ID(s) 1337957 31958

Special Collections DSMZ CIP

History DSMZ <- M. Goodfellow, N858 <- R.E. Gordon, IMRU <- J. Scharfen, W-113/66

Links

Amycolatopsis orientalis N858 is a bacterium of the family Pseudonocardiaceae.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 50265

DSM 43388,KCTC 9422,CIP 109149

@ref 20215

Last LPSN update 2026-05-29 08:27:59

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Amycolatopsis

Species Amycolatopsis orientalis

Full scientific name Amycolatopsis orientalis (Pittenger and Brigham 1956) Lechevalier et al. 1986

Synonyms (2)

"Streptomyces orientalis"
Nocardia orientalis

BacDive ID	Other strains from **Amycolatopsis orientalis** (9)	Type strain
13215	A. orientalis M 43-05865, Pittinger M43-05865, CCTMLa 2924, ... (type strain)
13218	A. orientalis F 719, F7-19, Kunz F-719, DSM 46075, ATCC ...
100010	A. orientalis STI07671, IMRU 1671
100011	A. orientalis STI07672, IMRU 1628
100014	A. orientalis STI07512, IMRU 1149
100015	A. orientalis STI07673, IMRU 1601
100016	A. orientalis STI07674, IMRU 1600
100017	A. orientalis STI07677, IMRU 1107
163999	A. orientalis JCM 3128, NRRL B-3891

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	95.988
125439		92.121

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
11005	GYM+S MEDIUM (DSMZ Medium 214)		Medium recipe at MediaDive	Name: GYM+S MEDIUM (DSMZ Medium 214) Composition: Starch 20.0 g/l Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
11005	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.327

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
11005	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	AO43388_01 assembly for Amycolatopsis orientalis DSM 43388	contig	GCA_000411975	1337957.3	2554235156	1337957	37.85

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: AO43388_01 assembly for Amycolatopsis orientalis DSM 43388
NCBI: GCA_000411975

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	95.99	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.33	no
125439	motility	BacteriaNetⓘ	no	92.12	no
125439	spore_formation	BacteriaNetⓘ	yes	69.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Amycolatopsis orientalis DSM 43388
PATRIC: 1337957.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.43	no
125438	anaerobic	anaerobicⓘ	no	97.43	no
125438	spore-forming	spore-formingⓘ	yes	81.02	no
125438	aerobic	aerobicⓘ	yes	88.96	no
125438	thermophilic	thermophileⓘ	no	95.00	no
125438	flagellated	motile2+ⓘ	no	89.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	In silico identification of silent primycin biosynthetic gene clusters within the family Pseudonocardiaceae.	Kovacs-Valasek M, Fekete C, Kovacs-Valasek A.	Heliyon	10.1016/j.heliyon.2024.e41065	2025
	Genome Sequence of the Vancomycin-Producing Amycolatopsis orientalis subsp. orientalis Strain KCTC 9412T.	Jeong H, Sim YM, Kim HJ, Lee DW, Lim SK, Lee SJ.	Genome Announc	10.1128/genomea.00408-13	2013
	Genomic insight into O-demethylation of 4-methoxybenzoate by a two-component system from Amycolatopsis magusensis KCCM40447.	Pardhe BD, Paudel L, Han SR, Oh TJ.	Heliyon	10.1016/j.heliyon.2024.e25083	2024
Genetics	Genetics and Genomics of the Genus Amycolatopsis.	Kumari R, Singh P, Lal R.	Indian J Microbiol	10.1007/s12088-016-0590-8	2016
Phylogeny	Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species.	Adamek M, Alanjary M, Sales-Ortells H, Goodfellow M, Bull AT, Winkler A, Wibberg D, Kalinowski J, Ziemert N.	BMC Genomics	10.1186/s12864-018-4809-4	2018
Genetics	Comparative Genomic Analysis of the Hydrocarbon-Oxidizing Dibenzothiophene-Desulfurizing Gordonia Strains.	Frantsuzova E, Delegan Y, Bogun A, Sokolova D, Nazina T.	Microorganisms	10.3390/microorganisms11010004	2022
Genetics	Revisiting the Taxonomic Status of the Biomedically and Industrially Important Genus Amycolatopsis, Using a Phylogenomic Approach.	Sangal V, Goodfellow M, Blom J, Tan GYA, Klenk HP, Sutcliffe IC.	Front Microbiol	10.3389/fmicb.2018.02281	2018
Enzymology	Purification and properties of Amycolatopsis mediterranei DSM 43304 lipase and its potential in flavour ester synthesis.	Dheeman DS, Henehan GT, Frias JM.	Bioresour Technol	10.1016/j.biortech.2010.11.074	2011
Enzymology	Influence of cultivation conditions on the production of a thermostable extracellular lipase from Amycolatopsis mediterranei DSM 43304.	Dheeman DS, Frias JM, Henehan GT.	J Ind Microbiol Biotechnol	10.1007/s10295-009-0643-7	2010
	A Novel Lipase from Streptomyces exfoliatus DSMZ 41693 for Biotechnological Applications.	Rodriguez-Alonso G, Toledo-Marcos J, Serrano-Aguirre L, Rumayor C, Pasero B, Flores A, Saborido A, Hoyos P, Hernaiz MJ, de la Mata I, Arroyo M.	Int J Mol Sci	10.3390/ijms242317071	2023
	Expression of Genes for a Flavin Adenine Dinucleotide-Binding Oxidoreductase and a Methyltransferase from Mycobacterium chlorophenolicum Is Necessary for Biosynthesis of 10-Methyl Stearic Acid from Oleic Acid in Escherichia coli.	Machida S, Bakku RK, Suzuki I.	Front Microbiol	10.3389/fmicb.2017.02061	2017
Metabolism	In silico prospection of microorganisms to produce polyhydroxyalkanoate from whey: Caulobacter segnis DSM 29236 as a suitable industrial strain.	Bustamante D, Segarra S, Tortajada M, Ramon D, Del Cerro C, Auxiliadora Prieto M, Iglesias JR, Rojas A.	Microb Biotechnol	10.1111/1751-7915.13371	2019
Enzymology	The genus Amycolatopsis: Indigenous plasmids, cloning vectors and gene transfer systems.	Malhotra S, Lal R.	Indian J Microbiol	10.1007/s12088-007-0003-0	2007
Phylogeny	Fatty acid characterization of rapidly growing pathogenic aerobic actinomycetes as a means of identification.	McNabb A, Shuttleworth R, Behme R, Colby WD.	J Clin Microbiol	10.1128/jcm.35.6.1361-1368.1997	1997
Genetics	Genome Sequences of Amycolatopsis orientalis subsp. orientalis Strains DSM 43388 and DSM 46075.	Jeong H, Sim YM, Kim HJ, Lee YJ, Lee DW, Lim SK, Lee SJ	Genome Announc	10.1128/genomeA.00545-13	2013
Phylogeny	Nocardioides albertanoniae sp. nov., isolated from Roman catacombs.	Alias-Villegas C, Jurado V, Laiz L, Miller AZ, Saiz-Jimenez C.	Int J Syst Evol Microbiol	10.1099/ijs.0.043885-0	2013
Phylogeny	Reclassification of Amycolatopsis orientalis DSM 43387 as Amycolatopsis benzoatilytica sp. nov.	Majumdar S, Prabhagaran SR, Shivaji S, Lal R.	Int J Syst Evol Microbiol	10.1099/ijs.0.63766-0	2006

References

#11005	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43388
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Amycolatopsis orientalis (DSM 43388, CIP 109149, IMRU 1390)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000411975

Genome-based predictions

Predictions

Literature

Literature

References

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