Name: Elizabethkingia anophelis JM-87
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132124

Type strain:

Species: Elizabethkingia anophelis

Strain Designation: JM-87

Culture col. no.: DSM 29660, CCM 8570, CIP 110885, LMG 28604

Strain history: CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain JM-87, Elizabethkingia endophytica

NCBI tax ID(s): 1117645 (species)

SI-ID 396492

LMG 28604, CCM 8570, CIP 110885, DSM 29660

Other strains from Elizabethkingia anophelis

E. anophelis SF005912(FSU),
E. anophelis 543-79, CIP 111044
E. anophelis CIP 111067, CIP 200591

Section

Elizabethkingia anophelis JM-87 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from healthy internal stem tissue of 10 day-old sweet corn .

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Elizabethkingia*
	Species	**Elizabethkingia anophelis**
	Full Scientific Name (LPSN)	Elizabethkingia anophelis Kämpfer et al. 2011

	Synonym	Elizabethkingia anophelis subsp. endophytica
	Synonym	Elizabethkingia endophytica

Information on morphological and physiological properties Morphology

[Ref.: #116397]	Gram stain	negative

[Ref.: #116397]	Cell shape	rod-shaped

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23914]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #23914]

Culture medium growth

[Ref.: #23914]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23914]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23914]			growth	28 °C

[Ref.: #23914]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23914]	Sample type/isolated from	healthy internal stem tissue of 10 day-old sweet corn (Zea mays, cultivar 'Sweet Belle')
[Ref.: #23914]	Host species	Zea mays
[Ref.: #23914]	Geographic location (country and/or sea, region)	Alabama, Macon county, Tallassee, E.V. Smith Research Center
[Ref.: #23914]	Country	USA
[Ref.: #23914]	Country ISO 3 Code	USA
[Ref.: #23914]	Continent	North America

[Ref.: #116397]	Sample type/isolated from	Environment, Rhizosphere
[Ref.: #116397]	Geographic location (country and/or sea, region)	Alabama
[Ref.: #116397]	Country	United States of America
[Ref.: #116397]	Country ISO 3 Code	USA
[Ref.: #116397]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Stem (Branch)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP113704 (>99% sequence identity) for Elizabethkingia from Microbeatlas

Aquatic Samples	1948
Soil Samples	541
Animal Samples	2810
Plant Samples	300
Total Samples	5599

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23914]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #116397]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23914]	Elizabethkingia endophytica strain JM-87 16S ribosomal RNA gene, partial sequence	KP113704	1428	ENA	1117645 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Elizabethkingia anophelis JM-87	GCA_002022045	complete	GenBank	1117645 tax ID	*
[Ref.: #66792]	Elizabethkingia anophelis JM-87	GCA_002023135	contig	GenBank	1117645 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Elizabethkingia anophelis JM-87 NCBI: GCA_002022045.1
[Ref.: #69480]	flagellated	no	96.425	no
[Ref.: #69480]	gram-positive	no	97.86	no
[Ref.: #69480]	anaerobic	no	99.652	no
[Ref.: #69480]	aerobic	yes	90.656	no
[Ref.: #69480]	halophile	no	94.6	no
[Ref.: #69480]	spore-forming	no	94.467	no
[Ref.: #69480]	glucose-util	yes	85.691	no
[Ref.: #69480]	thermophile	no	99.579	yes
[Ref.: #69480]	motile	no	91.034	no
[Ref.: #69480]	glucose-ferment	no	91.817	no

Availability in culture collections External links

[Ref.: #23914]

Culture collection no.

DSM 29660, CCM 8570, CIP 110885, LMG 28604

[Ref.: #90480]

SI-ID 396492

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Elizabethkingia endophytica sp. nov., isolated from Zea mays and emended description of Elizabethkingia anophelisKampfer et al. 2011.	Kampfer P, Busse HJ, McInroy JA, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijs.0.000236	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23914

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29660

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90480

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396492.1 )

#116397 Collection of Institut Pasteur ; Curators of the CIP; CIP 110885
* These data were automatically processed and therefore are not curated

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