Planosporangium mesophilum (DSM 45475, BCC 51294, CCTCC AA 209049)

Name: Planosporangium mesophilum (DSM 45475, BCC 51294, CCTCC AA 209049)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132122

Type strain

Culture col. no. DSM 45475 BCC 51294 CCTCC AA 209049 KCTC 19779 TBRC 2212 2 more

NCBI tax ID(s) 689768

Special Collections DSMZ KCTC

Links

Planosporangium mesophilum DSM 45475 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from From rhizosphere soil of `Bletilla striata`.

Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 404076

KCTC 19779,TBRC:2212,NBRC109066,DSM 45475

@ref 20215

Last LPSN update 2025-12-16 10:01:25

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Planosporangium

Species Planosporangium mesophilum

Full scientific name Planosporangium mesophilum Cao et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence
67771	positive
125439	positive	99.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23912	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
23912	ISP2 MEDIUM (DSMZ Medium 987)		Medium recipe at MediaDive	Name: ISP2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
23912	positive	growth	28	mesophilic
67771	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125438	aerobe	91.116
125439	obligate aerobe	99.7

Observation

67771

Observationquinones: MK-9(H4), MK-9(H6) MK-9(H8)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
67771	From rhizosphere soil of `Bletilla striata`		Yunnan Province	China	CHN	Asia
23912	rhizosphere soil of Bletilla striata	Bletilla striata	Yunnan Province, Xishuangbanna	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
23912	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1194723v1 assembly for Planosporangium mesophilum TBRC 2212	contig	GCA_011947235	689768.3	8063008864	689768	55.33
66792	ASM1686325v1 assembly for Planosporangium mesophilum NBRC 109066	contig	GCA_016863255	689768.4	2999222273	689768	52.01

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
23912	Planosporangium mesophilum strain YIM 48875 16S ribosomal RNA gene, partial sequence	GU126491	1405		689768

GC content

@ref	GC-content (mol%)	Method
23912	71.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Planosporangium mesophilum NBRC 109066
NCBI: GCA_016863255

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	65.10	no
125439	motility	BacteriaNetⓘ	no	84.50	no
125439	gram_stain	BacteriaNetⓘ	positive	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Planosporangium mesophilum strain NBRC 109066
PATRIC: 689768.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	85.20	yes
125438	anaerobic	anaerobicⓘ	no	94.90	no
125438	spore-forming	spore-formingⓘ	yes	89.66	no
125438	aerobic	aerobicⓘ	yes	91.12	yes
125438	thermophilic	thermophileⓘ	no	92.99	yes
125438	flagellated	motile2+ⓘ	no	67.33	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planosporangium spinosum sp. nov., a novel actinobacterium isolated from tropical peat swamp forest soil in Rayong province of Thailand.	Tongtoht J, Suphannarot A, Boonchu P, Butdee W, Suriyachadkun C, Duangmal K, Mingma R.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006825	2025
Phylogeny	Planosporangium mesophilum sp. nov., isolated from rhizosphere soil of Bletilla striata.	Cao YR, Wang Q, Jin RX, Jiang Y, Lai HX, He WX, Xu LH, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.026096-0	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23912	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45475
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Planosporangium mesophilum (DSM 45475, BCC 51294, CCTCC AA 209049)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_011947235

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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