Name: Xylella fastidiosa subsp. multiplex PLM-G83
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132107

Type strain:

Species: Xylella fastidiosa subsp. multiplex

Strain Designation: PLM-G83

Culture col. no.: DSM 103418, ATCC 35871, ICMP 15199, ICMP 8735, LMG 09063, CFBP 8173

Strain history: <- BCCM/LMG <- ICMP, New Zealand <- J. M. Wells, Agricultural Research Service, USDA, Rutgers University New Brunswick, USA; PLM-G83

NCBI tax ID(s): 1267006 (strain), 644357 (subspecies)

SI-ID 10388

LMG 9063, ATCC 35871, ICMP 8735, ATCC 228771, ICMP 15199

Section

Xylella fastidiosa subsp. multiplex PLM-G83 is a mesophilic plant pathogen that was isolated from Prunus salicina, twigs with plum leaf scorch symptoms.

mesophilic
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Xylella*
	Species	**Xylella fastidiosa subsp. multiplex**
	Full Scientific Name (LPSN)	Xylella fastidiosa subsp. multiplex Schaad et al. 2009

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23897]

Culture medium

BOSEA MEDIUM (DSMZ Medium 1052)

[Ref.: #23897]

Culture medium growth

[Ref.: #23897]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23897]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23897]			growth	28 °C

[Ref.: #23897]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23897]	Sample type/isolated from	Prunus salicina, twigs with plum leaf scorch symptoms
[Ref.: #23897]	Host species	Prunus salicina
[Ref.: #23897]	Country	USA
[Ref.: #23897]	Country ISO 3 Code	USA
[Ref.: #23897]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF203388 (>99% sequence identity) for Xylella from Microbeatlas

Aquatic Samples	205
Soil Samples	250
Animal Samples	193
Plant Samples	67
Total Samples	715

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23897]	Pathogenicity (plant)	yes
[Ref.: #23897]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23897]	Xylella fastidiosa subsp. multiplex strain PL.788 16S ribosomal RNA gene, partial sequence	AF203388	1533	ENA	644357 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Xylella fastidiosa subsp. multiplex ATCC 35871	GCA_000428665	scaffold	GenBank	1267006 tax ID	*
[Ref.: #66792]	Xylella fastidiosa subsp. multiplex ATCC 35871	1267006.3	wgs	PATRIC	1267006 tax ID	*
[Ref.: #66792]	Xylella fastidiosa multiplex ATCC 35871	2524614868	draft	JGI IMG/M	1267006 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Xylella fastidiosa subsp. multiplex ATCC 35871 ATCC 35871 NCBI: GCA_000428665.1
[Ref.: #69480]	motile	no	82.261	no
[Ref.: #69480]	flagellated	no	97.359	no
[Ref.: #69480]	gram-positive	no	98.582	no
[Ref.: #69480]	anaerobic	no	97.726	no
[Ref.: #69480]	aerobic	no	59.816	no
[Ref.: #69480]	halophile	no	90.613	no
[Ref.: #69480]	spore-forming	no	96.443	no
[Ref.: #69480]	glucose-util	yes	82.418	no
[Ref.: #69480]	thermophile	no	91.33	yes
[Ref.: #69480]	glucose-ferment	no	79.352	no

Availability in culture collections External links

[Ref.: #23897]

Culture collection no.

DSM 103418, ATCC 35871, ICMP 15199, ICMP 8735, LMG 09063, CFBP 8173

[Ref.: #90463]

SI-ID 10388

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23897

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103418

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90463

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID10388.1 )

* These data were automatically processed and therefore are not curated

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Xylella fastidiosa subsp. multiplex ATCC 35871 ATCC 35871

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