Name: Vibrio sinaloensis T47
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132092

Type strain:

Species: Vibrio sinaloensis

Strain Designation: T47

Culture col. no.: DSM 101073

Strain history: <- N. I. Mohamad, Microbiome Laboratory, University of Malaya, Malaysia; T47

NCBI tax ID(s): 379097 (species)

SI-ID 403719

DSM 101073

Other strains from Vibrio sinaloensis

V. sinaloensis DSM 21333, CAIM 797, CECT 7298 (type strain)
V. sinaloensis DSM 21327, CAIM 695
V. sinaloensis DSM 21326, CAIM 648

Section

Vibrio sinaloensis T47 is a mesophilic animal pathogen that was isolated from sea water collected 20 cm below water surface.

animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio sinaloensis**
	Full Scientific Name (LPSN)	Vibrio sinaloensis Gomez-Gil et al. 2008

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23882]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #23882]

Culture medium growth

[Ref.: #23882]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23882]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23882]			growth	28 °C

[Ref.: #23882]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23882]

Name of produced compound

N acyl homoserine lactones

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23882]	Sample type/isolated from	sea water collected 20 cm below water surface
[Ref.: #23882]	Geographic location (country and/or sea, region)	Selangor, Morib Beach
[Ref.: #23882]	Country	Malaysia
[Ref.: #23882]	Country ISO 3 Code	MYS
[Ref.: #23882]	Continent	Asia
[Ref.: #23882]	Geographic location	2.7500°/101.4500°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23882]	Pathogenicity (animal)	yes, in single cases
[Ref.: #23882]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23882]	Vibrio sinaloensis strain T47 16S ribosomal RNA gene, partial sequence	KR058860	1444	ENA	379097 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio sinaloensis T47	GCA_000816475	contig	GenBank	379097 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vibrio sinaloensis T47 NCBI: GCA_000816475.1
[Ref.: #69480]	motile	yes	91.025	no
[Ref.: #69480]	flagellated	yes	93.236	no
[Ref.: #69480]	gram-positive	no	98.746	no
[Ref.: #69480]	anaerobic	no	97.546	no
[Ref.: #69480]	aerobic	yes	83.43	no
[Ref.: #69480]	halophile	no	52.072	no
[Ref.: #69480]	spore-forming	no	94.198	no
[Ref.: #69480]	glucose-util	yes	91.957	no
[Ref.: #69480]	thermophile	no	99.184	no
[Ref.: #69480]	glucose-ferment	yes	89.021	no

Availability in culture collections External links

[Ref.: #23882]

Culture collection no.

DSM 101073

[Ref.: #90448]

SI-ID 403719

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23882

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101073

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90448

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403719.1 )

* These data were automatically processed and therefore are not curated

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