Name: Sulfurovum denitrificans eps51
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132090

Type strain:

Species: Sulfurovum denitrificans

Strain Designation: eps51

Culture col. no.: DSM 19611, NBRC 102602

Strain history: <- K. Mori, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Japan; eps51 <- K. Mori and S. Hanada {2003}

NCBI tax ID(s): 2201018 (species)

SI-ID 404039

DSM 19611

Section

Sulfurovum denitrificans eps51 is a facultative anaerobe, chemolithoautotroph, mesophilic bacterium that was isolated from rock samples collected from a hydrothermal field.

Gram-negative
rod-shaped
chemolithoautotroph
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Helicobacteraceae*
	Genus	*Sulfurovum*
	Species	**Sulfurovum denitrificans**
	Full Scientific Name (LPSN)	Sulfurovum denitrificans Mori et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66571]	Gram stain	negative

[Ref.: #66571]	Cell length	0.6-1.4 µm

[Ref.: #66571]	Cell width	0.4 µm

[Ref.: #66571]	Cell shape	rod-shaped

[Ref.: #66571]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23880]

Culture medium

THIOGRANUM MEDIUM (DSMZ Medium 1570)

[Ref.: #23880]

Culture medium growth

[Ref.: #23880]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23880]

Culture medium composition

expand / minimize

[Ref.: #66571]

Culture medium

AP8SO1 medium

[Ref.: #66571]

Culture medium growth

[Ref.: #66571]

Culture medium

AP8SO1 agar

[Ref.: #66571]

Culture medium growth

		Temperature
[Ref.: #23880]	growth	30 °C
[Ref.: #66571]	optimum	30 °C
[Ref.: #66571]	growth	10-35 °C

[Ref.: #23880]	Temperature range	mesophilic
[Ref.: #66571]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #66571]			optimum	7
[Ref.: #66571]			growth	6.5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66571]

Oxygen tolerance

facultative anaerobe

[Ref.: #66571]

Nutrition type

chemolithoautotroph

[Ref.: #66571]

Halophily / tolerance level

slightly halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66571]		NaCl		growth	2-5	%
[Ref.: #66571]		NaCl		optimum	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66571]	carbon dioxide ChEBI	+	carbon source
[Ref.: #66571]	dioxygen ChEBI	+	electron acceptor
[Ref.: #66571]	elemental sulfur ChEBI	+	electron donor
[Ref.: #66571]	nitrate ChEBI	+	electron acceptor
[Ref.: #66571]	thiosulfate ChEBI	+	electron donor

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #66571]		catalase	-	1.11.1.6
[Ref.: #66571]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23880]	Sample type/isolated from	rock samples collected from a hydrothermal field
[Ref.: #23880]	Geographic location (country and/or sea, region)	Pacific Ocean, Izu-Bonin Arc, Suiyo Seamount
[Ref.: #23880]	Country	Japan
[Ref.: #23880]	Country ISO 3 Code	JPN
[Ref.: #23880]	Continent	Asia
[Ref.: #23880]	Geographic location	28.6000°/140.6330°

[Ref.: #66571]	Sample type/isolated from	rock sample from a hydrothermal field
[Ref.: #66571]	Sampling date	2002-07
[Ref.: #66571]	Geographic location (country and/or sea, region)	Suiyo Seamount, Izu-Bornin Arc
[Ref.: #66571]	Country	Pacific Ocean
[Ref.: #66571]	Enrichment culture	AP8SO1
[Ref.: #66571]	Enrichment culture composition	5 mM thiosulfate, N2/CO2/O2 (75:20:5) 150 kPa)
[Ref.: #66571]	Enrichment culture duration	7 days
[Ref.: #66571]	Enrichment culture temperature	30 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Terrestrial	#Geologic
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23880]	Sulfurovum sp. eps51 gene for 16S ribosomal RNA, partial sequence	LC322101	1439	ENA	2201018 tax ID

[Ref.: #23880]	GC-content	40.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #66571]	GC-content	40.00 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #23880]

Culture collection no.

DSM 19611, NBRC 102602

[Ref.: #90446]

SI-ID 404039

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sulfurovum denitrificans sp. nov., an obligately chemolithoautotrophic sulfur-oxidizing epsilonproteobacterium isolated from a hydrothermal field.	Mori K, Yamaguchi K, Hanada S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002803	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23880

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19611

#66571

Koji Mori, Kaoru Yamaguchi and Satoshi Hanada: Sulfurovum denitrificans sp. nov., an obligately chemolithoautotrophic sulfur-oxidizing epsilonproteobacterium isolated from a hydrothermal field. IJSEM 68: 2183 - 2187 2018 ( DOI 10.1099/ijsem.0.002803 , PubMed 29757127 )

#90446

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404039.1 )

* These data were automatically processed and therefore are not curated

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