Name: Venenivibrio stagnispumantis CP B.2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132082

Type strain:

Species: Venenivibrio stagnispumantis

Strain Designation: CP B.2, CP.B2

Culture col. no.: DSM 18763, JCM 14244

Strain history: A. Hetzer.

NCBI tax ID(s): 407998 (species)

SI-ID 324007

DSM 18763, JCM 14244

Special Collections

Section

Venenivibrio stagnispumantis CP B.2 is a microaerophile, Gram-negative, motile bacterium that was isolated from terrestrial hot spring Champagne Pool in Waiotapu.

Gram-negative
motile
rod-shaped
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Aquificota*
	Class	*Aquificia*
	Order	*Aquificales*
	Family	*Hydrogenothermaceae*
	Genus	*Venenivibrio*
	Species	**Venenivibrio stagnispumantis**
	Full Scientific Name (LPSN)	Venenivibrio stagnispumantis Hetzer et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32033]	Gram stain	negative

[Ref.: #32033]	Cell length	1.3 µm

[Ref.: #32033]	Cell width	0.37 µm

[Ref.: #32033]	Cell shape	rod-shaped

[Ref.: #32033]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7609]

Culture medium

VENENIVIBRIO STAGNISPUMANTIS MEDIUM (DSMZ Medium 1146)

[Ref.: #7609]

Culture medium growth

[Ref.: #7609]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7609]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7609]	growth	70 °C
[Ref.: #32033]	growth	45-75 °C
[Ref.: #32033]	optimum	70 °C
[Ref.: #67770]	growth	70 °C

	pH	Kind of pH		pH
[Ref.: #32033]			optimum	5.4
[Ref.: #32033]			growth	4.8-5.8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32033]

Oxygen tolerance

microaerophile

[Ref.: #32033]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32033]		NaCl		growth	0-0.8	%
[Ref.: #32033]		NaCl		optimum	0.4	%

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7609]	Sample type/isolated from	terrestrial hot spring Champagne Pool in Waiotapu
[Ref.: #7609]	Country	New Zealand
[Ref.: #7609]	Country ISO 3 Code	NZL
[Ref.: #7609]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Terrestrial hot spring in Waiotapu
[Ref.: #67770]	Country	New Zealand
[Ref.: #67770]	Country ISO 3 Code	NZL
[Ref.: #67770]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Environmental	#Terrestrial	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ989208 (>99% sequence identity) for Venenivibrio stagnispumantis subclade from Microbeatlas

Aquatic Samples	21
Soil Samples	2
Animal Samples	1
Plant Samples
Total Samples	24

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7609]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7609]	Venenivibrio stagnispumantis strain CP.B2 16S ribosomal RNA gene, complete sequence	DQ989208	1506	GenBank ENA	407998 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Venenivibrio stagnispumantis DSM 18763	2724679818	draft	JGI IMG/M	407998 tax ID	*
[Ref.: #66792]	Venenivibrio stagnispumantis CP.B2	GCA_026108055	scaffold	GenBank ENA	407998 tax ID	*

[Ref.: #7609]

GC-content

29.3 mol%

Availability in culture collections External links

[Ref.: #7609]

Culture collection no.

DSM 18763, JCM 14244

[Ref.: #90439]

SI-ID 324007

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Venenivibrio stagnispumantis gen. nov., sp. nov., a thermophilic hydrogen-oxidizing bacterium isolated from Champagne Pool, Waiotapu, New Zealand.	Hetzer A, McDonald IR, Morgan HW	Int J Syst Evol Microbiol	10.1099/ijs.0.64842-0	2008	*

References

#7609

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18763

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32033

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28283 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90439

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID324007.1 )

#28283

IJSEM 398 2008 ( DOI 10.1099/ijs.0.64842-0 , PubMed 18218938 )

* These data were automatically processed and therefore are not curated

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