Actinokineospora baliensis (DSM 45656, BTCC B554, NBRC 104211)

Name: Actinokineospora baliensis (DSM 45656, BTCC B554, NBRC 104211)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13207

Type strain

Strain Designation ID 03-0561

Culture col. no. DSM 45656 BTCC B554 NBRC 104211 ID 03-0561

NCBI tax ID(s) 547056

Special Collections DSMZ Literature strains

Links

Actinokineospora baliensis ID 03-0561 is a spore-forming, mesophilic, Gram-positive prokaryote that was isolated from soil.

spore-forming Gram-positive motile rod-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 406490

NBRC 104211,DSM 45656

@ref 20215

Last LPSN update 2025-12-16 09:50:02

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Actinokineospora

Species Actinokineospora baliensis

Full scientific name Actinokineospora baliensis Lisdiyanti et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell width	Cell shape
29447	positive	1.5-2 µm	rod-shaped
125439	positive
125439

Pigmentation

29447

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18013	BENNETT'S AGAR (DSMZ Medium 548)		Medium recipe at MediaDive	Name: BENNETT'S AGAR (DSMZ Medium 548) Composition: Agar 15.0 g/l Glucose 10.0 g/l N-Z amine 2.0 g/l Yeast extract 1.0 g/l Beef extract 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
18013	positive	growth	28	mesophilic
29447	positive	growth	25-28	mesophilic
29447	positive	optimum	25-28	mesophilic

Culture pH

@ref	Ability	Type	PH
29447	positive	optimum	7
29447	positive	growth	7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.2

Spore formation

@ref	Spore formation
29447
125439

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29447	NaCl	positive	growth	0-1 %
29447	NaCl	positive	optimum	0-1 %

Observation

29447

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29447	4853 ChEBI	esculin	+	hydrolysis
29447	17234 ChEBI	glucose	+	carbon source
29447	17306 ChEBI	maltose	+	carbon source
29447	37684 ChEBI	mannose	+	carbon source
29447	17632 ChEBI	nitrate	+	reduction
29447	17992 ChEBI	sucrose	+	carbon source
29447	27082 ChEBI	trehalose	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
18013	soil	Bali, Eka Karya Botanical Garden	Indonesia	IDN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB447488 (>99% sequence identity) for Actinokineospora from Microbeatlas

Aquatic Samples	7
Soil Samples	62
Animal Samples	12
Plant Samples	32
Total Samples	113

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18013	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1690769v1 assembly for Actinokineospora baliensis DSM 45656	contig	GCA_016907695	547056.3	2893647412	547056	77.74

Genome browser: GCA_016907695

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18013	Actinokineospora baliensis gene for 16S rRNA, partial sequence, strain: NBRC 104211	AB447488	1451		547056

GC content

18013

GC-content (mol%)71.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinokineospora baliensis DSM 45656
NCBI: GCA_016907695

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	97.20	no
125439	motility	BacteriaNetⓘ	no	96.70	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinokineospora baliensis strain DSM 45656
PATRIC: 547056.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	82.73	yes
125438	anaerobic	anaerobicⓘ	no	96.33	no
125438	spore-forming	spore-formingⓘ	yes	79.99	no
125438	aerobic	aerobicⓘ	yes	89.99	no
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	flagellated	motile2+ⓘ	no	60.93	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Biosynthetic novelty index reveals the metabolic potential of rare actinobacteria isolated from highly oligotrophic sediments.	Gonzalez-Salazar LA, Quezada M, Rodriguez-Orduna L, Ramos-Aboites H, Capon RJ, Souza-Saldivar V, Barona-Gomez F, Licona-Cassani C.	Microb Genom	10.1099/mgen.0.000921	2023
Phylogeny	Actinokineospora mzabensis sp. nov., a novel actinomycete isolated from Saharan soil.	Aouiche A, Bouras N, Mokrane S, Zitouni A, Schumann P, Sproer C, Sabaou N, Klenk HP	Antonie Van Leeuwenhoek	10.1007/s10482-014-0328-8	2014
Phylogeny	Actinokineospora baliensis sp. nov., Actinokineospora cibodasensis sp. nov. and Actinokineospora cianjurensis sp. nov., isolated from soil and plant litter.	Lisdiyanti P, Otoguro M, Ratnakomala S, Lestari Y, Hastuti RD, Triana E, Katsuhiko A, Widyastuti Y	Int J Syst Evol Microbiol	10.1099/ijs.0.013276-0	2009

References

#18013	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45656
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29447	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25853 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinokineospora baliensis (DSM 45656, BTCC B554, NBRC 104211)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016907695

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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