Roseivirga ehrenbergii (DSM 102268, KCTC 12282, KMM 6017)

Name: Roseivirga ehrenbergii (DSM 102268, KCTC 12282, KMM 6017)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132058

Type strain

Culture col. no. DSM 102268 KCTC 12282 KMM 6017 LMG 22567 NCIMB 14502 1 more

NCBI tax ID(s) 279360

Special Collections DSMZ JCM KCTC

Links

Roseivirga ehrenbergii DSM 102268 is an aerobe, mesophilic, rod-shaped prokaryote that was isolated from green alga Ulva fenestrata.

rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 131849

LMG 22567,KCTC 12282,JCM 13514,DSM 102268

@ref 20215

Last LPSN update 2025-12-16 10:01:25

Domain Pseudomonadati

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Roseivirgaceae

Genus Roseivirga

Species Roseivirga ehrenbergii

Full scientific name Roseivirga ehrenbergii Nedashkovskaya et al. 2005

Synonyms (3)

Roseivirga seohaensis
Roseivirga seohaensis
Marinicola seohaensis

BacDive ID	Other strains from **Roseivirga ehrenbergii** (1)	Type strain
133262	R. ehrenbergii SW-152, JCM 12600, KCTC 12312, CIP 108749

Morphology

Cell morphology

@ref	Cell shape	Gram stain	Confidence
67771	rod-shaped
67771		negative
125439		negative	99.7

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23849	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
23849	positive	growth	25	mesophilic
67770	positive	growth	25	mesophilic
67771	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	obligate aerobe	95.9

Spore formation

@ref	Spore formation	Confidence
125439		99.4

Observation

@ref	Observation
67770	quinones: MK-7
67771	quinones: MK-7

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	coenzyme A metabolism	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	kanosamine biosynthesis II	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	octane oxidation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	serine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	NAD metabolism	83.33	15 of 18
66794	peptidoglycan biosynthesis	80	12 of 15
66794	flavin biosynthesis	80	12 of 15
66794	Entner Doudoroff pathway	80	8 of 10
66794	cellulose degradation	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	3-chlorocatechol degradation	80	4 of 5
66794	vitamin K metabolism	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	valine metabolism	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	lipid metabolism	77.42	24 of 31
66794	phenylalanine metabolism	76.92	10 of 13
66794	purine metabolism	75.53	71 of 94
66794	butanoate fermentation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	tryptophan metabolism	73.68	28 of 38
66794	isoprenoid biosynthesis	73.08	19 of 26
66794	proline metabolism	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	pyrimidine metabolism	71.11	32 of 45
66794	glycolysis	70.59	12 of 17
66794	threonine metabolism	70	7 of 10
66794	propionate fermentation	70	7 of 10
66794	leucine metabolism	69.23	9 of 13
66794	alanine metabolism	68.97	20 of 29
66794	histidine metabolism	68.97	20 of 29
66794	formaldehyde oxidation	66.67	2 of 3
66794	lysine metabolism	66.67	28 of 42
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	acetoin degradation	66.67	2 of 3
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	citric acid cycle	64.29	9 of 14
66794	glutathione metabolism	64.29	9 of 14
66794	pentose phosphate pathway	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	urea cycle	61.54	8 of 13
66794	non-pathway related	60.53	23 of 38
66794	coenzyme M biosynthesis	60	6 of 10
66794	factor 420 biosynthesis	60	3 of 5
66794	bacilysin biosynthesis	60	3 of 5
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	heme metabolism	57.14	8 of 14
66794	reductive acetyl coenzyme A pathway	57.14	4 of 7
66794	degradation of sugar alcohols	56.25	9 of 16
66794	cysteine metabolism	55.56	10 of 18
66794	d-xylose degradation	54.55	6 of 11
66794	methionine metabolism	53.85	14 of 26
66794	ethanol fermentation	50	1 of 2
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	ketogluconate metabolism	50	4 of 8
66794	quinate degradation	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	catecholamine biosynthesis	50	2 of 4
66794	tyrosine metabolism	50	7 of 14
66794	toluene degradation	50	2 of 4
66794	glycogen biosynthesis	50	2 of 4
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	sulfate reduction	46.15	6 of 13
66794	carotenoid biosynthesis	45.45	10 of 22
66794	vitamin B6 metabolism	45.45	5 of 11
66794	oxidative phosphorylation	45.05	41 of 91
66794	phenol degradation	45	9 of 20
66794	arachidonic acid metabolism	44.44	8 of 18
66794	polyamine pathway	43.48	10 of 23
66794	ascorbate metabolism	40.91	9 of 22
66794	D-cycloserine biosynthesis	40	2 of 5
66794	glycogen metabolism	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	myo-inositol biosynthesis	40	4 of 10
66794	gallate degradation	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	cyanate degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	sphingosine metabolism	33.33	2 of 6
66794	degradation of hexoses	33.33	6 of 18
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	pantothenate biosynthesis	33.33	2 of 6
66794	vitamin B1 metabolism	30.77	4 of 13
66794	chlorophyll metabolism	27.78	5 of 18
66794	cholesterol biosynthesis	27.27	3 of 11
66794	metabolism of disaccharids	27.27	3 of 11
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	degradation of pentoses	25	7 of 28
66794	allantoin degradation	22.22	2 of 9
66794	vitamin B12 metabolism	20.59	7 of 34

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Algae	#Green algae

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Host species
23849	green alga Ulva fenestrata	Sea of Japan, Gulf of Peter the Great, Pallada Bay	Russia	RUS	Europe
67770	Green alga Ulva fenestrata collected in Pallada Bay	Gulf of Peter the Great				Ulva fenestrata
67771	From green alga `Ulva fenestrata`		International waters

Taxonmaps

69479

Global distribution of 16S sequence AY608410 (>99% sequence identity) for Roseivirga from Microbeatlas

Aquatic Samples	992
Soil Samples	42
Animal Samples	68
Plant Samples	8
Total Samples	1110

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
23849	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM434080v1 assembly for Roseivirga ehrenbergii DSM 102268	scaffold	GCA_004340805	279360.18	2799112213	279360	76.65
67770	ASM159300v1 assembly for Roseivirga ehrenbergii KMM 6017	contig	GCA_001593005	279360.5	2811995049	279360	69.25

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
23849	Roseivirga ehrenbergii strain KMM 6017 16S ribosomal RNA gene, partial sequence	AY608410	1420		279360

GC content

@ref	GC-content (mol%)	Method
23849	40.2	thermal denaturation, midpoint method (Tm)
23849	39.3	sequence analysis
67770	41.3	thermal denaturation, midpoint method (Tm)
67771	40.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Roseivirga ehrenbergii KMM 6017
IMG: 2811995049

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	no	63.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.90	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Roseivirga seohaensis (Yoon et al. 2005) Lau et al. 2006 as a later synonym of Roseivirga ehrenbergii Nedashkovskaya et al. 2005 and emendation of the species description.	Nedashkovskaya OI, Kim SB, Lysenko AM, Kalinovskaya NI, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.65686-0	2008
Phylogeny	Mangrovivirga cuniculi gen. nov., sp. nov., a moderately halophilic bacterium isolated from bioturbated Red Sea mangrove sediment, and proposal of the novel family Mangrovivirgaceae fam. nov.	Sefrji FO, Michoud G, Marasco R, Merlino G, Daffonchio D	Int J Syst Evol Microbiol	10.1099/ijsem.0.004866	2021
Phylogeny	Roseivirga ehrenbergii gen. nov., sp. nov., a novel marine bacterium of the phylum 'Bacteroidetes', isolated from the green alga Ulva fenestrata.	Nedashkovskaya OI, Kim SB, Lee DH, Lysenko AM, Shevchenko LS, Frolova GM, Mikhailov VV, Lee KH, Bae KS	Int J Syst Evol Microbiol	10.1099/ijs.0.63341-0	2005
Phylogeny	Proposal to reclassify Roseivirga ehrenbergii (Nedashkovskaya et al., 2008) as Roseivirga seohaensis comb. nov., description of Roseivirga seohaensis subsp. aquiponti subsp. nov. and emendation of the genus Roseivirga.	Selvaratnam C, Thevarajoo S, Goh KM, Chan KG, Chong CS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001553	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23849	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102268
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Roseivirga ehrenbergii (DSM 102268, KCTC 12282, KMM 6017)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004340805

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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