Name: Octadecabacter antarcticus 307
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132057

Type strain:

Species: Octadecabacter antarcticus

Strain Designation: 307

Culture col. no.: DSM 28635, CIP 106731

Strain history: CIP <- 2000, JJ. Gosink, Washington Univ., Seattle, Washington, USA: strain 307

NCBI tax ID(s): 391626 (strain), 1217908 (species)

SI-ID 265615

CIP 106731

Section

Octadecabacter antarcticus 307 is a psychrophilic, Gram-negative, rod-shaped bacterium that was isolated from polar sea ice, 25 - 50 cm from the bottom of the ice.

Gram-negative
rod-shaped
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Octadecabacter*
	Species	**Octadecabacter antarcticus**
	Full Scientific Name (LPSN)	Octadecabacter antarcticus Gosink et al. 1998

Information on morphological and physiological properties Morphology

[Ref.: #116407]	Gram stain	negative

[Ref.: #116407]	Cell shape	rod-shaped

[Ref.: #116407]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23848]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #23848]

Culture medium growth

[Ref.: #23848]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23848]

Culture medium composition

expand / minimize

[Ref.: #39563]

Culture medium

Marine agar (MA)

[Ref.: #39563]

Culture medium growth

[Ref.: #39563]

Culture medium composition

expand / minimize

[Ref.: #116407]

Culture medium

CIP Medium 13

[Ref.: #116407]

Culture medium growth

[Ref.: #116407]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #23848]		growth	4 °C
[Ref.: #39563]		growth	4 °C
[Ref.: #116407]		growth	5 °C
[Ref.: #116407]	no	growth	15 °C
[Ref.: #116407]	no	growth	25 °C
[Ref.: #116407]	no	growth	30 °C
[Ref.: #116407]	no	growth	37 °C
[Ref.: #116407]	no	growth	41 °C
[Ref.: #116407]	no	growth	45 °C

[Ref.: #23848]	Temperature range	psychrophilic
[Ref.: #39563]	Temperature range	psychrophilic
[Ref.: #116407]	Temperature range	psychrophilic
[Ref.: #116407]	Temperature range	mesophilic
[Ref.: #116407]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

	Salt	Tested relation		Salt conc.
[Ref.: #116407]	NaCl	no	growth	0	%
[Ref.: #116407]	NaCl	no	growth	2	%
[Ref.: #116407]	NaCl	no	growth	4	%
[Ref.: #116407]	NaCl	no	growth	6	%
[Ref.: #116407]	NaCl	no	growth	8	%
[Ref.: #116407]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #116407]	citrate ChEBI	-	carbon source
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #116407]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #116407]	hippurate ChEBI	-	hydrolysis
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #116407]	malonate ChEBI	-	assimilation
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #116407]	nitrate ChEBI	-	builds gas from
[Ref.: #116407]	nitrate ChEBI	-	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #116407]	nitrite ChEBI	-	builds gas from
[Ref.: #116407]	nitrite ChEBI	-	reduction
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #116407]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #116407]	acetoin ChEBI	-
[Ref.: #116407]	glucose ChEBI		-
[Ref.: #68369]	indole ChEBI			-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #116407]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #116407]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116407]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #116407]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #116407]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116407]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #116407]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116407]	oxidase	+
[Ref.: #116407]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116407]	tryptophan deaminase	-
[Ref.: #116407]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #23848]	24710	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.
[Ref.: #23848]	24709	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #23848]	14065	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #23848]	14064	-	+	-	+/-	-	+/-	-	-	-	-	+	-	-	-	-	-	-	-	-	-
[Ref.: #23848]	14063	-	+	-	+/-	-	+/-	-	-	-	-	+	-	-	-	-	-	-	-	-	-
[Ref.: #23848]	14062	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #116407]	9761	-	+	-	+	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23848]	Sample type/isolated from	polar sea ice, 25 - 50 cm from the bottom of the ice
[Ref.: #23848]	Geographic location (country and/or sea, region)	McMurdo Sound (77° 53' S, 166° 35' E)
[Ref.: #23848]	Country	Antarctica
[Ref.: #23848]	Country ISO 3 Code	ATA
[Ref.: #23848]	Continent	Australia and Oceania
[Ref.: #23848]	Geographic location	-77.8833°/166.5830°

[Ref.: #116407]	Sample type/isolated from	Environment, Ice, 25-50 cm from bottom of sea
[Ref.: #116407]	Geographic location (country and/or sea, region)	McMurdo sound
[Ref.: #116407]	Country	Antarctica
[Ref.: #116407]	Country ISO 3 Code	ATA
[Ref.: #116407]	Continent	Antarctica
[Ref.: #116407]	Isolation date	1992
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Ice
#Climate	#Cold	#Polar

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence U14583 (>99% sequence identity) for Octadecabacter from Microbeatlas

Aquatic Samples	5836
Soil Samples	265
Animal Samples	238
Plant Samples	51
Total Samples	6390

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23848]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116407]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23848]	Octadecabacter antarcticus 307 16S ribosomal RNA gene, partial sequence	U14583	1389	ENA	391626 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Octadecabacter antarcticus 307	GCA_000155675	complete	GenBank	391626 tax ID	*
[Ref.: #66792]	Octadecabacter antarcticus 307	391626.16	plasmid	PATRIC	391626 tax ID	*
[Ref.: #66792]	Octadecabacter antarcticus 307	2510461047	complete	JGI IMG/M	391626 tax ID	*

[Ref.: #23848]

GC-content

56 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Octadecabacter antarcticus 307 307 NCBI: GCA_000155675.2
[Ref.: #69480]	motile	no	56.762	no
[Ref.: #69480]	flagellated	no	88.821	no
[Ref.: #69480]	gram-positive	no	98.076	no
[Ref.: #69480]	anaerobic	no	98.364	no
[Ref.: #69480]	aerobic	yes	88.112	no
[Ref.: #69480]	halophile	yes	68.863	no
[Ref.: #69480]	spore-forming	no	95.362	no
[Ref.: #69480]	thermophile	no	96.615	no
[Ref.: #69480]	glucose-util	yes	61.443	yes
[Ref.: #69480]	glucose-ferment	no	90.135	yes

Availability in culture collections External links

[Ref.: #23848]

Culture collection no.

DSM 28635, CIP 106731

[Ref.: #90415]

SI-ID 265615

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23848

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28635

#39563 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90415

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265615.1 )

#116407 Collection of Institut Pasteur ; Curators of the CIP; CIP 106731
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Octadecabacter antarcticus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Octadecabacter antarcticus 307 307

Change proposal

Change proposal