Name: Lamprobacter modestohalophilus Sivash
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132052

Type strain:

Species: Lamprobacter modestohalophilus

Strain Designation: Sivash

Culture col. no.: DSM 25653, VKM B-2538, INMI RO-1, Gorlenko V.M. INMI, Sivash

Strain history: <- V. Gorlenko, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; Sivash <- V. M. Gorlenko

NCBI tax ID(s): 1064514 (species)

SI-ID 398948

DSM 25653

Section

Lamprobacter modestohalophilus Sivash is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from mud of lake Sivash.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Lamprobacter*
	Species	**Lamprobacter modestohalophilus**
	Full Scientific Name (LPSN)	Lamprobacter modestohalophilus Gorlenko et al. 1988

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #69480]	Motility	yes Confidence in %95.975

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23843]

Culture medium

LAMPROBACTER MEDIUM (DSMZ Medium 1389)

[Ref.: #23843]

Culture medium growth

[Ref.: #23843]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23843]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23843]			growth	28 °C

[Ref.: #23843]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %98.133

[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.983

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23843]	Sample type/isolated from	mud of lake Sivash
[Ref.: #23843]	Geographic location (country and/or sea, region)	Crimea, Sivash
[Ref.: #23843]	Country	Ukraine
[Ref.: #23843]	Country ISO 3 Code	UKR
[Ref.: #23843]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23843]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23843]	Lamprobacter modestohalophilus strain Sivash 16S ribosomal RNA gene, partial sequence	HQ877095	1416	ENA	1064514 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lamprobacter modestohalophilus DSM 25653	GCA_016583905	scaffold	GenBank	1064514 tax ID	*
[Ref.: #66792]	Lamprobacter modestohalophilus strain DSM 25653	1064514.6	wgs	PATRIC	1064514 tax ID	*

[Ref.: #23843]

GC-content

62.5 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lamprobacter modestohalophilus DSM 25653 NCBI: GCA_016583905.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lamprobacter modestohalophilus DSM 25653 NCBI: GCA_016583905.1
[Ref.: #69480]	motile	yes	80.584	no
[Ref.: #69480]	flagellated	no	58.745	no
[Ref.: #69480]	gram-positive	no	98.86	no
[Ref.: #69480]	anaerobic	yes	96.718	no
[Ref.: #69480]	aerobic	no	93.885	no
[Ref.: #69480]	halophile	no	84.003	no
[Ref.: #69480]	spore-forming	no	91.5	no
[Ref.: #69480]	thermophile	no	98.628	yes
[Ref.: #69480]	glucose-util	yes	66.071	no
[Ref.: #69480]	glucose-ferment	no	84.85	no

Availability in culture collections External links

[Ref.: #23843]

Culture collection no.

DSM 25653, VKM B-2538, INMI RO-1, Gorlenko V.M. INMI, Sivash

[Ref.: #90413]

SI-ID 398948

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	[Phylogenetic position of the purple sulfur bacterium Lamprobacter modestohalophilus determined based on the data on new strains of the species].	Gorlenko VM, Briantseva IA, Lunina ON, Turova TP	Mikrobiologiia		2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23843

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25653

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90413

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398948.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Lamprobacter modestohalophilus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Lamprobacter modestohalophilus DSM 25653

Lamprobacter modestohalophilus DSM 25653

Change proposal

Change proposal