Cite this strain

"Intestinimonas timonensis" (DSM 100769, CSUR P2010, GD4)

BacDive ID 132024

Type strain

Strain Designation GD4

Culture col. no. DSM 100769 CSUR P2010 GD4

NCBI tax ID(s) 1689270

Special Collections DSMZ Cadoret human gut

Links

"Intestinimonas timonensis" GD4 is a mesophilic prokaryote that was isolated from stool specimen of a healthy patient.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 399725

DSM 100769

@ref 20215

Last LPSN update 2025-12-16 10:01:24

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Oscillospiraceae

Genus Intestinimonas

Species "Intestinimonas timonensis"

Full scientific name Intestinimonas timonensis Durand et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	91.1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23815	PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)		Medium recipe at MediaDive	Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
23815	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	anaerobe	90.649
125439	anaerobe	100

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	#Specimen
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	-

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
23815	stool specimen of a healthy patient	France	FRA	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	PRJEB30006 assembly for Intestinimonas timonensis GD4	scaffold	GCA_900626145	1689270.3	2882072473	1689270	71.74

Genome browser: GCA_900626145

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
23815	Intestinimonas sp. GD4 partial 16S rRNA gene, strain GD4	LN870298	1495		1689270

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Intestinimonas timonensis GD4
NCBI: GCA_900626145

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	83.00	no
125439	motility	BacteriaNetⓘ	no	55.90	no
125439	gram_stain	BacteriaNetⓘ	negative	91.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	100.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Intestinimonas timonensis GD4
NCBI: GCA_900626145.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	72.30	no
125438	anaerobic	anaerobicⓘ	yes	90.65	no
125438	aerobic	aerobicⓘ	no	93.27	no
125438	spore-forming	spore-formingⓘ	no	60.44	no
125438	thermophilic	thermophileⓘ	no	87.64	yes
125438	flagellated	motile2+ⓘ	no	74.92	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23815	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100769
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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