Name: Haloimpatiens massiliensis Mt13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132020

Type strain:

Species: Haloimpatiens massiliensis

Strain Designation: Mt13

Culture col. no.: DSM 100591, CSUR P1935

Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France; Mt13 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2015}

NCBI tax ID(s): 1658110 (species)

Section

Haloimpatiens massiliensis Mt13 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from stool specimen of healthy African infant.

motile
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Haloimpatiens*
	Species	"Haloimpatiens massiliensis"
	Full Scientific Name (LPSN)	Haloimpatiens massiliensis Anani et al. 2020

Synonym

"Khelaifiella massiliensis"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %90.248

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23811]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #23811]

Culture medium growth

[Ref.: #23811]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23811]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23811]			growth	37 °C

[Ref.: #23811]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.678

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23811]	Sample type/isolated from	stool specimen of healthy African infant
[Ref.: #23811]	Country	Niger
[Ref.: #23811]	Country ISO 3 Code	NER
[Ref.: #23811]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Specimen
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LN850733 (>99% sequence identity) for Haloimpatiens lingqiaonensis from Microbeatlas

Aquatic Samples	373
Soil Samples	251
Animal Samples	529
Plant Samples	29
Total Samples	1182

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23811]	Clostridiaceae bacterium mt13 partial 16S rRNA gene, strain mt13	LN850733	1476	ENA	1658110 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Khelaifiella massiliensis Mt13	2831408181	draft	JGI IMG/M	1658110 tax ID	*
[Ref.: #66792]	Haloimpatiens massiliensis Mt13	GCA_900184255	scaffold	GenBank	1658110 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Haloimpatiens massiliensis Mt13 NCBI: GCA_900184255.1
[Ref.: #69481]	spore-forming	yes	100	no

Availability in culture collections External links

[Ref.: #23811]

Culture collection no.

DSM 100591, CSUR P1935

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Taxono-genomics and description of Haloimpatiens massiliensis sp. nov., a new bacterium isolated from the gut of a healthy infant.	Anani H, Tidjani Alou M, Fontanini A, Raoult D, Lagier JC, Fournier PE	New Microbes New Infect	10.1016/j.nmni.2019.100631	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23811

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100591

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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