Name: Actinokineospora fastidiosa DSM 43855
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13196

Type strain:

Species: Actinokineospora fastidiosa

Culture col. no.: DSM 43855, ATCC 31181, IFO 14105, JCM 3276, NBRC 14105, NRRL B-16697, VKM Ac-1419, BCRC 13397, CGMCC 4.1172, IFM 0209, IMSNU 20054, KCTC 9155, KCTC 9297

Strain history: KCC A-0276 <-- S. ?mura KA-605 <-- ATCC 31181 <-- Chas. Pfizer & Co.; FD 25028.

NCBI tax ID(s): 1816 (species)

SI-ID 88625

ATCC 31181, DSM 43855, IFO 14105, JCM 3276, CCRC 13397, NRRL B-16697, VKM Ac-1419, KCTC 9155, KCTC 9297, NBRC 14105, BCRC 13397, AS 4.1172, CGMCC 4.1172

Special Collections

Other strains from Actinokineospora fastidiosa

Section

Actinokineospora fastidiosa DSM 43855 is a spore-forming bacterium that was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Actinokineospora*
	Species	**Actinokineospora fastidiosa**
	Full Scientific Name (LPSN)	Actinokineospora fastidiosa (Henssen et al. 1987 ex Celmer et al. 1977) Labeda et al. 2010

Synonym

Amycolatopsis fastidiosa

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %92.767

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11337]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %90.281

[Ref.: #69481]

Ability of spore formation

yes Confidence in %97

[Ref.: #11337]	Name of produced compound	antibiotic 41,043 and 41,494
[Ref.: #67770]	Name of produced compound	Antibiotic 41,494

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11337]	Sample type/isolated from	soil
[Ref.: #11337]	Country	Egypt
[Ref.: #11337]	Country ISO 3 Code	EGY
[Ref.: #11337]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Egypt
[Ref.: #67770]	Country ISO 3 Code	EGY
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ200601 (>99% sequence identity) for Actinokineospora fastidiosa subclade from Microbeatlas

Aquatic Samples	2
Soil Samples	78
Animal Samples	7
Plant Samples
Total Samples	87

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Amycolatopsis fastidiosa partial 16S rRNA gene, strain IMSNU 20054T	AJ400710	1489	GenBank ENA	1816 tax ID
[Ref.: #11337]	Amycolatopsis fastidiosa strain NRRL B-16697 16S ribosomal RNA gene, partial sequence	GQ200601	1408	GenBank ENA	1816 tax ID
[Ref.: #20218]	Amycolatopsis fastidiosa 16S rRNA (part.)	X53200	1331	GenBank ENA	1816 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinokineospora fastidiosa JCM 3276	GCA_014648415	scaffold	GenBank ENA	1816 tax ID	*
[Ref.: #66792]	Actinokineospora fastidiosa strain JCM 3276	1816.5	wgs	PATRIC	1816 tax ID	*

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GC-content

73 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinokineospora fastidiosa JCM 3276 NCBI: GCA_014648415.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	97	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinokineospora fastidiosa JCM 3276 NCBI: GCA_014648415.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.767	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.834	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.281	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	86.085	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.354	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.667	no

Availability in culture collections External links

[Ref.: #11337]

Culture collection no.

DSM 43855, ATCC 31181, IFO 14105, JCM 3276, NBRC 14105, NRRL B-16697, VKM Ac-1419, BCRC 13397, CGMCC 4.1172, IFM 0209, IMSNU 20054, KCTC 9155, KCTC 9297

[Ref.: #82404]

SI-ID 88625

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Actinokineospora acnipugnans sp. nov., an actinomycete isolated from soil, showing potential uses in cosmetics.	Dahal RH, Shim DS, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002078	2017	*
Phylogeny	Actinokineospora soli sp. nov., a thermotolerant actinomycete isolated from soil, and emended description of the genus Actinokineospora.	Tang X, Zhou Y, Zhang J, Ming H, Nie GX, Yang LL, Tang SK, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.035832-0	2011	*
Phylogeny	Emended description of the genus Actinokineospora Hasegawa 1988 and transfer of Amycolatopsis fastidiosa Henssen et al. 1987 as Actinokineospora fastidiosa comb. nov.	Labeda DP, Price NP, Tan GYA, Goodfellow M, Klenk HP	Int J Syst Evol Microbiol	10.1099/ijs.0.016568-0	2009	*

References

#11337

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43855

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82404

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID88625.1 )

* These data were automatically processed and therefore are not curated

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Actinokineospora fastidiosa JCM 3276

Actinokineospora fastidiosa JCM 3276

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