Actinokineospora fastidiosa (DSM 43855, ATCC 31181, IFO 14105)

Name: Actinokineospora fastidiosa (DSM 43855, ATCC 31181, IFO 14105)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13196

Type strain

Culture col. no. DSM 43855 ATCC 31181 IFO 14105 JCM 3276 NBRC 14105 8 more

NCBI tax ID(s) 1816

Special Collections DSMZ JCM KCTC

Links

Actinokineospora fastidiosa DSM 43855 is a mesophilic prokaryote that was isolated from soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 88625

ATCC 31181,DSM 43855,IFO 14105,JCM 3276,CCRC 13397,NRRL B-16697,VKM Ac-1419,KCTC 9155,KCTC 9297,NBRC 14105,BCRC 13397,AS 4.1172,CGMCC 4.1172

@ref 20215

Last LPSN update 2025-12-16 09:50:02

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Actinokineospora

Species Actinokineospora fastidiosa

Full scientific name Actinokineospora fastidiosa (Henssen et al. 1987 ex Celmer et al. 1977) Labeda et al. 2010

Synonyms (1)

Amycolatopsis fastidiosa

BacDive ID	Other strains from **Actinokineospora fastidiosa** (2)	Type strain
13197	A. fastidiosa DSM 45492, UTMC 968
13198	A. fastidiosa DSM 45552, UTMC 534

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	100
125439		95.1
125438	positive	92.767

Multimedia

@ref:	11337
multimedia content:	DSM_43855.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43855.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
11337	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
11337	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.281
125439	obligate aerobe	99.6

Spore formation

@ref	Spore formation	Confidence
125439		97.8

Compound production

@ref	Compound
11337	antibiotic 41,043 and 41,494
67770	Antibiotic 41,494

Observation

67770

Observationquinones: MK-9(H₄), MK-9(H₂)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
11337	soil	Egypt	EGY	Africa
67770	Soil	Egypt	EGY	Africa

Taxonmaps

69479

Global distribution of 16S sequence GQ200601 (>99% sequence identity) for Actinokineospora fastidiosa subclade from Microbeatlas

Aquatic Samples	2
Soil Samples	78
Animal Samples	7
Plant Samples
Total Samples	87

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11337	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464841v1 assembly for Actinokineospora fastidiosa JCM 3276	scaffold	GCA_014648415	1816.5	3001876229	1816	73.27

Genome browser: GCA_014648415

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Amycolatopsis fastidiosa 16S rRNA (part.)	X53200	1331	1816
11337	Amycolatopsis fastidiosa strain NRRL B-16697 16S ribosomal RNA gene, partial sequence	GQ200601	1408	1816
67770	Amycolatopsis fastidiosa partial 16S rRNA gene, strain IMSNU 20054T	AJ400710	1489	1816
124043	Actinokineospora fastidiosa strain JCM 3276 16S ribosomal RNA gene, partial sequence.	MT760433	1326	1816

GC content

@ref	GC-content (mol%)	Method
67770	73	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinokineospora fastidiosa JCM 3276
NCBI: GCA_014648415

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	97.80	no
125439	motility	BacteriaNetⓘ	no	95.10	no
125439	gram_stain	BacteriaNetⓘ	positive	100.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinokineospora fastidiosa JCM 3276
NCBI: GCA_014648415.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.77	no
125438	anaerobic	anaerobicⓘ	no	97.83	no
125438	aerobic	aerobicⓘ	yes	90.28	no
125438	spore-forming	spore-formingⓘ	yes	86.09	no
125438	thermophilic	thermophileⓘ	no	97.35	yes
125438	flagellated	motile2+ⓘ	no	88.67	no

Literature

Title	Authors	Journal	DOI	Year
Selective biosynthesis of a rhamnosyl nosiheptide by a novel bacterial rhamnosyltransferase.	Du Y, Xia Y, Wu L, Chen L, Rong J, Fan J, Chen Y, Wu X.	Microb Biotechnol	10.1111/1751-7915.14412	2024
Biosynthetic novelty index reveals the metabolic potential of rare actinobacteria isolated from highly oligotrophic sediments.	Gonzalez-Salazar LA, Quezada M, Rodriguez-Orduna L, Ramos-Aboites H, Capon RJ, Souza-Saldivar V, Barona-Gomez F, Licona-Cassani C.	Microb Genom	10.1099/mgen.0.000921	2023
Insecticidal potential of l-isoleucine, N-allyloxycarbonyl-, dodecyl ester from Actinokineospora fastidiosa against Plutella xylostella.	Raguvaran K, Kalpana M, Manimegalai T, Kalaivani S, Devapriya P, Maheswaran R.	Environ Sci Pollut Res Int	10.1007/s11356-025-36860-z	2025
Bioefficacy of isolated compound l-isoleucine, N-allyloxycarbonyl-, and dodecyl ester from entomopathogenic actinobacteria Actinokineospora fastidiosa against agricultural insect pests, human vector mosquitoes, and antioxidant activities.	Raguvaran K, Kalpana M, Manimegalai T, Maheswaran R.	Environ Sci Pollut Res Int	10.1007/s11356-022-23565-w	2023
Emended description of the genus Actinokineospora Hasegawa 1988 and transfer of Amycolatopsis fastidiosa Henssen et al. 1987 as Actinokineospora fastidiosa comb. nov.	Labeda DP, Price NP, Tan GYA, Goodfellow M, Klenk HP	Int J Syst Evol Microbiol	10.1099/ijs.0.016568-0	2009
Description of Actinokineospora acnipugnans sp. nov., an actinomycete isolated from soil, showing potential uses in cosmetics.	Dahal RH, Shim DS, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002078	2017
Actinokineospora soli sp. nov., a thermotolerant actinomycete isolated from soil, and emended description of the genus Actinokineospora.	Tang X, Zhou Y, Zhang J, Ming H, Nie GX, Yang LL, Tang SK, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.035832-0	2011

References

#11337	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43855
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinokineospora fastidiosa (DSM 43855, ATCC 31181, IFO 14105)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014648415

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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