Name: Actinoalloteichus hymeniacidonis DSM 45092
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13194

Type strain:

Species: Actinoalloteichus hymeniacidonis

Culture col. no.: DSM 45092, CGMCC 4.2500, CIP 109428, JCM 13436, HPA 177, BCRC 16835, NCIMB 14383, NRRL B-24537

Strain history: CIP <- 2006, JCM <- 2005, H. Zhang, Chinese Acad. Sci., Beijing, China: strain HPA177

NCBI tax ID(s): 340345 (species)

SI-ID 295946

NRRL B-24537, CGMCC 4.2500, JCM 13436, CIP 109428, DSM 45092, BCRC 16835

Section

Actinoalloteichus hymeniacidonis DSM 45092 is an obligate aerobe, spore-forming, mesophilic bacterium that was isolated from marine sponge Hymeniacidon perleve.

spore-forming
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Actinoalloteichus*
	Species	**Actinoalloteichus hymeniacidonis**
	Full Scientific Name (LPSN)	Actinoalloteichus hymeniacidonis Zhang et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #120028]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #120028]	Cell shape	rod-shaped

[Ref.: #120028]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %96.756

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12334]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12334]

Culture medium growth

[Ref.: #12334]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12334]

Culture medium composition

expand / minimize

[Ref.: #37551]

Culture medium

MEDIUM 689 - for Actinoalloteichus hymeniacidonis

[Ref.: #37551]

Culture medium growth

[Ref.: #120028]

Culture medium

CIP Medium 366

[Ref.: #120028]

Culture medium growth

[Ref.: #120028]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #12334]	growth	28 °C
[Ref.: #37551]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #12334]	Temperature range	mesophilic
[Ref.: #37551]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #120028]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	yes Confidence in %91
[Ref.: #69480]	Ability of spore formation	yes Confidence in %98.654

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆), MK-9(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #120028]	nitrate ChEBI	-	reduction
[Ref.: #120028]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #120028]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120028]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #120028]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120028]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #120028]	11556	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120028]	11857	-	+	+	+	-	+	-	-	-	+	-	-	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12334]	Sample type/isolated from	marine sponge Hymeniacidon perleve
[Ref.: #12334]	Host species	Hymeniacidon perleve
[Ref.: #12334]	Geographic location (country and/or sea, region)	Dalian
[Ref.: #12334]	Country	China
[Ref.: #12334]	Country ISO 3 Code	CHN
[Ref.: #12334]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Marine sponge (Hymeniacidon perleve)
[Ref.: #67770]	Host species	Hymeniacidon perleve
[Ref.: #67770]	Geographic location (country and/or sea, region)	Dalian
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #120028]	Sample type/isolated from	Marine, sponge
[Ref.: #120028]	Country	China
[Ref.: #120028]	Country ISO 3 Code	CHN
[Ref.: #120028]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ144222 (>99% sequence identity) for Actinoalloteichus from Microbeatlas

Aquatic Samples	370
Soil Samples	2648
Animal Samples	458
Plant Samples	335
Total Samples	3811

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12334]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120028]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12334]	Actinoalloteichus hymeniacidonis strain HPA177 16S ribosomal RNA gene, partial sequence	DQ144222	1470	ENA	340345 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinoalloteichus hymeniacidonis HPA177(T) (=DSM 45092(T))	GCA_001747425	complete	GenBank	340345 tax ID	*
[Ref.: #66792]	Actinoalloteichus hymeniacidonis DSM 45092	GCA_014203365	contig	GenBank	340345 tax ID	*
[Ref.: #66792]	Actinoalloteichus hymeniacidonis strain DSM 45092	340345.5	wgs	PATRIC	340345 tax ID	*
[Ref.: #66792]	Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T))	340345.3	complete	PATRIC	340345 tax ID	*
[Ref.: #66792]	Actinoalloteichus hymeniacidonis DSM 45092	2863033670	draft	JGI IMG/M	340345 tax ID	*
[Ref.: #66792]	Actinoalloteichus hymeniacidonis DSM 45092 Genome sequencing	2615840661	complete	JGI IMG/M	340345 tax ID	*

[Ref.: #67770]

GC-content

68.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinoalloteichus hymeniacidonis HPA177(T) (=DSM 45092(T)) NCBI: GCA_001747425.1
[Ref.: #69481]	spore-forming	yes	91	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinoalloteichus hymeniacidonis HPA177(T) (=DSM 45092(T)) NCBI: GCA_001747425.1
[Ref.: #69480]	flagellated	no	97.55	no
[Ref.: #69480]	gram-positive	yes	90.242	no
[Ref.: #69480]	anaerobic	no	99	no
[Ref.: #69480]	aerobic	yes	91.824	no
[Ref.: #69480]	halophile	no	62.165	no
[Ref.: #69480]	spore-forming	yes	83.673	no
[Ref.: #69480]	glucose-util	yes	89.362	no
[Ref.: #69480]	thermophile	no	96.936	no
[Ref.: #69480]	motile	no	91.756	no
[Ref.: #69480]	glucose-ferment	no	88.667	no

Availability in culture collections External links

[Ref.: #12334]

Culture collection no.

DSM 45092, CGMCC 4.2500, CIP 109428, JCM 13436, HPA 177, BCRC 16835, NCIMB 14383, NRRL B-24537

[Ref.: #82402]

SI-ID 295946

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation.	Nouioui I, Ruckert C, Willemse J, van Wezel GP, Klenk HP, Busche T, Kalinowski J, Bredholt H, Zotchev SB	Antonie Van Leeuwenhoek	10.1007/s10482-017-0920-9	2017	*
Genetics	Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177(T) isolated from a marine sponge.	Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Ruckert C	Stand Genomic Sci	10.1186/s40793-016-0213-3	2016	*
Phylogeny	Actinoalloteichus hoggarensis sp. nov., an actinomycete isolated from Saharan soil.	Boudjelal F, Zitouni A, Bouras N, Schumann P, Sproer C, Sabaou N, Klenk HP	Int J Syst Evol Microbiol	10.1099/ijs.0.000216	2015	*
Phylogeny	Actinoalloteichus hymeniacidonis sp. nov., an actinomycete isolated from the marine sponge Hymeniacidon perleve.	Zhang H, Zheng W, Huang J, Luo H, Jin Y, Zhang W, Liu Z, Huang Y	Int J Syst Evol Microbiol	10.1099/ijs.0.64217-0	2006	*

References

#12334

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45092

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37551 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82402

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID295946.1 )

#120028 Collection of Institut Pasteur ; Curators of the CIP; CIP 109428
* These data were automatically processed and therefore are not curated

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Actinoalloteichus hymeniacidonis HPA177(T) (=DSM 45092(T))

Actinoalloteichus hymeniacidonis HPA177(T) (=DSM 45092(T))

Change proposal

Change proposal