Name: Mycobacterium houstonense MF-89
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131823

Type strain:

Species: Mycobacterium houstonense

Strain Designation: MF-89, W5198

Culture col. no.: DSM 44676, ATCC 49403, CDC 80-719, CCUG 47581, JCM 15656, CIP 107828

Strain history: CIP 107828 <-- G. Goolsby W5198 <-- R. J. Wallace Mf-89.

NCBI tax ID(s): 146021 (species)

Section

Mycobacterium houstonense MF-89 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from facial abscess.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium houstonense**
	Full Scientific Name (PNU)	Mycobacterium houstonense Schinsky et al. 2004

Synonym

Mycolicibacterium houstonense

Information on morphological and physiological properties Morphology

[Ref.: #29958]	Gram stain	positive

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %91.529

Multimedia content

[Ref.: #11973]

Caption:

Medium 645 37°C

[Ref.: #11973]

Intellectual property rights:

[Ref.: #11973]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11973]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #11973]

Culture medium growth

[Ref.: #11973]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #11973]

Culture medium composition

expand / minimize

[Ref.: #36379]

Culture medium

MEDIUM 55 - for Mycobacterium

[Ref.: #36379]

Culture medium growth

		Temperature
[Ref.: #11973]	growth	37 °C
[Ref.: #29958]	growth	28-42 °C
[Ref.: #29958]	optimum	35 °C
[Ref.: #36379]	growth	37 °C
[Ref.: #57764]	growth	37-42 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #11973]	Temperature range	mesophilic
[Ref.: #29958]	Temperature range	mesophilic
[Ref.: #36379]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #57764]

Oxygen tolerance

aerobe

[Ref.: #29958]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.941

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29958]		NaCl		optimum	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29958]	fructose ChEBI	+	carbon source
[Ref.: #29958]	glucose ChEBI	+	carbon source
[Ref.: #29958]	mannitol ChEBI	+	carbon source
[Ref.: #29958]	mannose ChEBI	+	carbon source
[Ref.: #29958]	myo-inositol ChEBI	+	carbon source
[Ref.: #29958]	nitrate ChEBI	+	reduction
[Ref.: #29958]	sorbitol ChEBI	+	carbon source
[Ref.: #29958]	trehalose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29958]	arylsulfatase	+	3.1.6.1
[Ref.: #29958]	catalase	+	1.11.1.6
[Ref.: #29958]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11973]	Sample type/isolated from	facial abscess
[Ref.: #11973]	Geographic location (country and/or sea, region)	Texas, Houston
[Ref.: #11973]	Country	USA
[Ref.: #11973]	Country ISO 3 Code	USA
[Ref.: #11973]	Continent	North America

[Ref.: #57764]	Sample type/isolated from	Human facial abscess
[Ref.: #57764]	Geographic location (country and/or sea, region)	Houston
[Ref.: #57764]	Country	USA
[Ref.: #57764]	Country ISO 3 Code	USA
[Ref.: #57764]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Face wound
[Ref.: #67770]	Geographic location (country and/or sea, region)	Houston, TX
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Other	#Abscess
#Host Body-Site	#Organ	#Skin, Nail, Hair

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LT223693 (>99% sequence identity) for Mycolicibacterium from Microbeatlas

Aquatic Samples	64
Soil Samples	45
Animal Samples	50
Plant Samples	337
Total Samples	496

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11973]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11973]	Mycobacterium houstonense strain Ho1as 16S ribosomal RNA gene, partial sequence	AY012579	1440	ENA	146021 tax ID
[Ref.: #67770]	Mycobacterium houstonense partial 16S rRNA gene, strain ATCC 49403	LT223693	1506	ENA	146021 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mycolicibacterium houstonense ATCC 49403T	GCA_900078665	scaffold	GenBank	146021 tax ID
[Ref.: #66792]	Mycobacterium houstonense strain type strain: ATCC 49403	146021.3	wgs	PATRIC	146021 tax ID	*
[Ref.: #66792]	Mycolicibacterium houstonense ATCC 49403	2775507220	draft	JGI IMG/M	146021 tax ID	*
[Ref.: #66792]	Mycolicibacterium houstonense DSM 44676	GCA_025823315	scaffold	GenBank	146021 tax ID	*

[Ref.: #11973]	GC-content	64 mol%
[Ref.: #67770]	GC-content	64 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	67 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycolicibacterium houstonense ATCC 49403T NCBI: GCA_900078665.2
[Ref.: #69480]	anaerobic	no	99.487	yes
[Ref.: #69480]	gram-positive	yes	100	yes
[Ref.: #69480]	spore-forming	no	99.941	yes
[Ref.: #69480]	thermophile	no	99.552	yes
[Ref.: #69480]	motile	no	91.529	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycolicibacterium houstonense ATCC 49403T NCBI: GCA_900078665.2
[Ref.: #69481]	spore-forming	no	98	no

Availability in culture collections External links

[Ref.: #11973]

Culture collection no.

DSM 44676, ATCC 49403, CDC 80-719, CCUG 47581, JCM 15656, CIP 107828

[Ref.: #20218]

Associated Passport(s) in StrainInfo

381464, 114255, 114257

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomic variation in the Mycobacterium fortuitum third biovariant complex: description of Mycobacterium boenickei sp. nov., Mycobacterium houstonense sp. nov., Mycobacterium neworleansense sp. nov. and Mycobacterium brisbanense sp. nov. and recognition of Mycobacterium porcinum from human clinical isolates.	Schinsky MF, Morey RE, Steigerwalt AG, Douglas MP, Wilson RW, Floyd MM, Butler WR, Daneshvar MI, Brown-Elliott BA, Wallace RJ, McNeil MM, Brenner DJ, Brown JM	Int J Syst Evol Microbiol	10.1099/ijs.0.02743-0	2004	*
Genetics	Draft Genome Sequence of Mycobacterium houstonense Strain ATCC 49403T.	Levasseur A, Asmar S, Robert C, Drancourt M	Genome Announc	10.1128/genomeA.00443-16	2016	*

References

#11973

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44676

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29958

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26327 (see below)

#36379 ; Curators of the CIP;
#57764 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47581

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#26327

IJSEM 1653 2004 ( DOI 10.1099/ijs.0.02743-0 , PubMed 15388725 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Mycobacterium houstonense in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Mycolicibacterium houstonense ATCC 49403T

Mycolicibacterium houstonense ATCC 49403T

Change proposal

Change proposal