Pseudomonas cuatrocienegasensis (DSM 23418, CIP 109853, LMG 24676)

Name: Pseudomonas cuatrocienegasensis (DSM 23418, CIP 109853, LMG 24676)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13172

Type strain

Strain Designation 1N, 1NT A.E. Escalante

Culture col. no. DSM 23418 CIP 109853 LMG 24676 1N CCM 7899 1 more

NCBI tax ID(s) 543360

Special Collections DSMZ CIP Literature strains

History <- CIP; CIP 109853 <- J. Caballero-Mellado, Centro de Ciencias Genomicas Universidad Nacional Autonoma de Mexico <- A.E. Escalante, Departamento de Ecologìa Evolutiva, Instituto de Ecologìa, Universidad Nacional Autònoma de Mèxico CIP <- 2008, J. Caballero-Mellado, Av. Universidad N° 2001, Col. Chamilpa, Cuernavaca, Morelos, Mexico : strain 1NT A.E. Escalante

Links

Pseudomonas cuatrocienegasensis 1N is an obligate aerobe, mesophilic, Gram-negative prokaryote that was isolated from water .

Gram-negative motile rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 356285

LMG 24676,CIP 109853,DSM 23418,CCM 7899

@ref 20215

Last LPSN update 2026-02-09 11:21:03

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas cuatrocienegasensis

Full scientific name Pseudomonas cuatrocienegasensis Escalante et al. 2009

BacDive ID	Other strains from **Pseudomonas cuatrocienegasensis** (1)	Type strain
137018	P. cuatrocienegasensis 3N A.E. Escalante, CIP 109854

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29099	negative	1.2 µm	0.53 µm	rod-shaped
118806	negative			rod-shaped
125438	negative				99.769
125439	negative				99.8
125439					94.9

Pigmentation

29099

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17195	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
33330	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
118806	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17195	positive	growth	28	mesophilic
29099	positive	growth	28-32	mesophilic
29099	positive	optimum	30	mesophilic
33330	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

118806

Oxygen toleranceobligate aerobe

Spore formation

@ref	Spore formation	Confidence
29099
125439		99.4

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
29099	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
29099	27689 ChEBI	decanoate	+	carbon source
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
29099	33984 ChEBI	fucose	+	carbon source
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
118806	17632 ChEBI	nitrate	-	reduction
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
118806	16301 ChEBI	nitrite	-	reduction
29099	26546 ChEBI	rhamnose	+	carbon source
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
29099	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
118806	35581 ChEBI	indole
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29099	catalase	+	1.11.1.6
118806	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
29099	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118806	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
118806	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118806	-	+	+	+	+	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
17195	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	+	-	+	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
17195	water (evaporating lagoon)	Coahuila state, Cuatro Ciénegas	Mexico	MEX	North America
118806	Environment, Water, desiccation pond	Cuatro Ciénegas, Coahuila	Mexico	MEX	North America	2004

Taxonmaps

69479

Global distribution of 16S sequence EU791281 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	459
Soil Samples	173
Animal Samples	102
Plant Samples	37
Total Samples	771

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17195	1	Risk group (German classification) According to TRBA 466
118806	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2663763600 annotated assembly for Pseudomonas cuatrocienegasensis CIP 109853	scaffold	GCA_900110925	543360.4	2663763600	543360	65.71

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17195	Pseudomonas cuatrocienegasensis strain 1N 16S ribosomal RNA gene, partial sequence	EU791281	1449		543360

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas cuatrocienegasensis CIP 109853
NCBI: GCA_900110925

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	yes	94.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	72.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas cuatrocienegasensis CIP 109853
NCBI: GCA_900110925.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.77	yes
125438	anaerobic	anaerobicⓘ	no	97.68	yes
125438	aerobic	aerobicⓘ	yes	89.20	yes
125438	spore-forming	spore-formingⓘ	no	88.32	yes
125438	thermophilic	thermophileⓘ	no	99.99	no
125438	flagellated	motile2+ⓘ	yes	87.93	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas cuatrocienegasensis sp. nov., isolated from an evaporating lagoon in the Cuatro Cienegas valley in Coahuila, Mexico.	Escalante AE, Caballero-Mellado J, Martinez-Aguilar L, Rodriguez-Verdugo A, Gonzalez-Gonzalez A, Toribio-Jimenez J, Souza V	Int J Syst Evol Microbiol	10.1099/ijs.0.006189-0	2009

References

#17195	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23418
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25528	IJSEM 1416 2009 ( DOI 10.1099/ijs.0.006189-0 , PubMed 19502326 )
#29099	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25528
#33330	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118806	Collection of Institut Pasteur ; Curators of the CIP; CIP 109853
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Pseudomonas cuatrocienegasensis (DSM 23418, CIP 109853, LMG 24676)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900110925

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media