Cellulomonas sp. (DSM 102585, Leaf334)

Name: Cellulomonas sp. (DSM 102585, Leaf334)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131681

Type strain

Strain Designation Leaf334

Culture col. no. DSM 102585 Leaf334

NCBI tax ID(s) 40001

Special Collections DSMZ Arabidopsis

History <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf334 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

Links

Leaf334 is a bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 401859

DSM 102585

@ref 20215

Last LPSN update 2026-02-09 11:31:31

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Cellulomonadaceae

Genus Cellulomonas

Full scientific name Cellulomonas Bergey et al. 1923 (Approved Lists 1980)

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.7

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23477	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
23477	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
23477	leaf of Arabidopsis thaliana, wild-type genotype	Arabidopsis thaliana	Tuebingen Farm (48.5560194N 9.134944444E)	Germany	DEU	Europe	48.556	9.1349 48.556/9.1349

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Leaf334 assembly for Cellulomonas sp. Leaf334	contig	GCA_001424195	1736339.3	2643221900	1736339	76.35

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Cellulomonas sp. Leaf334
NCBI: GCA_001424195

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	56.90	no
125439	motility	BacteriaNetⓘ	no	70.40	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cellulomonas sp. Leaf334
PATRIC: 1736339.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.51	no
125438	anaerobic	anaerobicⓘ	no	95.78	no
125438	spore-forming	spore-formingⓘ	no	53.35	no
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	aerobic	aerobicⓘ	yes	80.82	no
125438	flagellated	motile2+ⓘ	no	85.50	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23477	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102585
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us