Phocaeicola fibrisolvens (DSM 102146, Sanger 21, Sanger_21)

Name: Phocaeicola fibrisolvens (DSM 102146, Sanger 21, Sanger_21)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131626

Type strain

Strain Designation Sanger 21, Sanger_21

Culture col. no. DSM 102146 Sanger 21 Sanger_21 JCM 34813

NCBI tax ID(s) 2981793

Special Collections DSMZ JCM

History DSMZ <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_21

Links

Phocaeicola fibrisolvens Sanger 21 is a bacterium that was isolated from faeces from healthy human.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 407171

JCM 34813,DSM 102146

@ref 20215

Last LPSN update 2026-05-29 08:37:39

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Bacteroidaceae

Genus Phocaeicola

Species Phocaeicola fibrisolvens

Full scientific name Phocaeicola fibrisolvens Hitch et al. 2022

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	93.786

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23422	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
23422	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	anaerobe	90.708
125439	obligate anaerobe	99.566

Spore formation

@ref	Spore formation	Confidence
125438		91.434
125439		99.794

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
23422	faeces from healthy human	Homo sapiens	Cambridgeshire	United Kingdom	GBR	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2556712v1 assembly for Phocaeicola fibrisolvens Sanger_21	scaffold	GCA_025567125	2981793.4	8055105317	2981793	53.95

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2556712v1 assembly for Phocaeicola fibrisolvens Sanger_21
NCBI: GCA_025567125

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	99.57	no
125439	motility	BacteriaNetⓘ	no	88.35	no
125439	gram_stain	BacteriaNetⓘ	negative	87.88	no
125439	spore_formation	BacteriaNetⓘ	no	99.79	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Phocaeicola fibrisolvens Sanger_21
NCBI: GCA_025567125.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	93.79	no
125438	anaerobic	anaerobicⓘ	yes	90.71	no
125438	aerobic	aerobicⓘ	no	92.99	no
125438	spore-forming	spore-formingⓘ	no	91.43	no
125438	thermophilic	thermophileⓘ	no	93.84	yes
125438	flagellated	motile2+ⓘ	no	88.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23422	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102146
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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