[Ref.: #12633] |
Sample type/isolated from |
plate contaminant |
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[Ref.: #44227] |
Sample type/isolated from |
Plate contaminant |
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[Ref.: #67770] |
Sample type/isolated from |
Plate contaminant |
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[Ref.: #118245] |
Sample type/isolated from |
Plate contaminant |
* marker position based on {}
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Isolation sources categories |
#Engineered |
#Laboratory |
#Contaminant |
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Information on genomic background e.g. entries in nucleic sequence databass
Sequence information
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16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
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Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #20218] |
Pseudomonas chlororaphis strain ATCC 9446 16S ribosomal RNA gene, partial sequence |
AF094723 |
1458 |
|
587753 tax ID |
* |
[Ref.: #20218] |
Pseudomonas chlororaphis partial 16S rRNA gene, type strain ICMP 13613T |
AJ308301 |
1371 |
|
587753 tax ID |
* |
[Ref.: #20218] |
Pseudomonas chlororaphis strain ATCC 9446 16S ribosomal RNA (rrsA) gene, partial sequence |
FJ652610 |
1459 |
|
587753 tax ID |
* |
[Ref.: #20218] |
Pseudomonas chlororaphis strain DSM 50083 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
DQ023306 |
566 |
|
587753 tax ID |
* |
[Ref.: #20218] |
Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083 16S ribosomal RNA gene, partial sequence |
FJ544575 |
1359 |
|
333 tax ID |
* |
[Ref.: #20218] |
P.chlororaphis (strain DSM 50083T) 16S rRNA gene |
Z76673 |
1492 |
|
333 tax ID |
* |
[Ref.: #20218] |
Pseudomonas chlororaphis gene for 16S rRNA |
D84011 |
1531 |
|
587753 tax ID |
* |
[Ref.: #20218] |
Pseudomonas chlororaphis gene for 16S ribosomal RNA, partial sequence, strain: IFO 3904 |
D86004 |
1329 |
|
587753 tax ID |
* |
[Ref.: #20218] |
P.chlororaphis (strain LMG 5004T) 16S rRNA gene |
Z76657 |
1493 |
|
333 tax ID |
* |
[Ref.: #20218] |
Pseudomonas chlororaphis subsp. chlororaphis gene for 16S rRNA, partial sequence, strain: NBRC 3904 |
AB680166 |
1462 |
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333 tax ID |
* |
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Availability in culture collections
External links
[Ref.: #12633] |
Culture collection no. |
DSM 50083, ATCC 9446, CCM 1975, ICPB 2392, IFO 3904, NBRC 3904, NCIB 9392, NRRL B-560, CCUG 552 B, LMG 6220, CCM 292, CIP 63.22, JCM 2778, AJ 2066, BCRC 11566, CCUG 552, CECT 4470, CFBP 2132, HAMBI 2011, IAM 12354, IAM 1511, ICMP 13613, LMG 5004, LMG 6457, NCCB 76041, NCIMB 9392, NCPPB 1798, NCTC 13002, VKM B-1246, VKM B-897, VTT E-95581, IMET 10404, NRRL: B-560 |
[Ref.: #82368] |
SI-ID 311044
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* |
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Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
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Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Metabolism |
Regulation of phenazine-1-carboxamide production by quorum sensing in type strains of Pseudomonas chlororaphis subsp. chlororaphis and Pseudomonas chlororaphis subsp. piscium. |
Morohoshi T, Yabe N, Yaguchi N, Xie X, Someya N |
J Biosci Bioeng |
10.1016/j.jbiosc.2022.03.004 |
2022 |
* |
Phylogeny |
Pseudomonas viciae sp. nov., isolated from rhizosphere of broad bean. |
Zhao H, Ma Y, Wu X, Zhang L |
Int J Syst Evol Microbiol |
10.1099/ijsem.0.004373 |
2020 |
* |
Pathogenicity |
Occurrence of non-toxic bioemulsifiers during polyhydroxyalkanoate production by Pseudomonas strains valorizing crude glycerol by-product. |
Kourmentza C, Araujo D, Sevrin C, Roma-Rodriques C, Lia Ferreira J, Freitas F, Dionisio M, Baptista PV, Fernandes AR, Grandfils C, Reis MAM |
Bioresour Technol |
10.1016/j.biortech.2019.02.066 |
2019 |
* |
Genetics |
Draft Genome Sequence of Pseudomonas chlororaphis ATCC 9446, a Nonpathogenic Bacterium with Bioremediation and Industrial Potential. |
Moreno-Avitia F, Lozano L, Utrilla J, Bolivar F, Escalante A |
Genome Announc |
10.1128/genomeA.00474-17 |
2017 |
* |
Phylogeny |
Reclassification of Pseudomonas aurantiaca as a synonym of Pseudomonas chlororaphis and proposal of three subspecies, P. chlororaphis subsp. chlororaphis subsp. nov., P. chlororaphis subsp. aureofaciens subsp. nov., comb. nov. and P. chlororaphis subsp. aurantiaca subsp. nov., comb. nov. |
Peix A, Valverde A, Rivas R, Igual JM, Ramirez-Bahena MH, Mateos PF, Santa-Regina I, Rodriguez-Barrueco C, Martinez-Molina E, Velazquez E |
Int J Syst Evol Microbiol |
10.1099/ijs.0.64621-0 |
2007 |
* |
Enzymology |
Two azurins with unusual redox and spectroscopic properties isolated from the Pseudomonas chlororaphis strains DSM 50083T and DSM 50135. |
Pinho D, Besson S, Brondino CD, Pereira E, de Castro B, Moura I |
J Inorg Biochem |
10.1016/j.jinorgbio.2003.10.023 |
2004 |
* |
Metabolism |
Tin-carbon cleavage of organotin compounds by pyoverdine from Pseudomonas chlororaphis. |
Inoue H, Takimura O, Kawaguchi K, Nitoda T, Fuse H, Murakami K, Yamaoka Y |
Appl Environ Microbiol |
10.1128/AEM.69.2.878-883.2003 |
2003 |
* |
Phylogeny |
The complex structure of ferri-ferribactins. |
Taraz K, Seipold L, Amann C, Budzikiewicz H |
Z Naturforsch C J Biosci |
10.1515/znc-2000-9-1027 |
2000 |
* |
Metabolism |
Degradation of triphenyltin by a fluorescent pseudomonad. |
Inoue H, Takimura O, Fuse H, Murakami K, Kamimura K, Yamaoka Y |
Appl Environ Microbiol |
10.1128/AEM.66.8.3492-3498.2000 |
2000 |
* |
|
Screening for Microbial Metal-Chelating Siderophores for the Removal of Metal Ions from Solutions. |
Hofmann M, Heine T, Malik L, Hofmann S, Joffroy K, Senges CHR, Bandow JE, Tischler D |
Microorganisms |
10.3390/microorganisms9010111 |
2021 |
* |
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Metabolic reconstruction of Pseudomonas chlororaphis ATCC 9446 to understand its metabolic potential as a phenazine-1-carboxamide-producing strain. |
Moreno-Avitia F, Utrilla J, Bolivar F, Nogales J, Escalante A |
Appl Microbiol Biotechnol |
10.1007/s00253-020-10913-4 |
2020 |
* |
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References
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#12633 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 50083
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#37700 |
; Curators of the CIP;
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#44227 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 552 B
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#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
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#68369 |
Automatically annotated from API 20NE .
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#68382 |
Automatically annotated from API zym .
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#82368 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID311044.1 )
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#118245 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 63.22
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- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
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