Name: Halopiger goleimassiliensis IIH3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131570

Type strain:

Species: Halopiger goleimassiliensis

Strain Designation: IIH3

Culture col. no.: DSM 27562, CSUR P3036

Strain history: <- Ch. Desnues, URMITE, Univ. Méditerranée, Marseille, France; KC430940.2 <- H. I. Imene, Bab Ezouar Univ. Algiers, Algeria/ Unité des Rickettsies, Marseille, France

NCBI tax ID(s): 1293048 (species)

SI-ID 407628

DSM 27562

Section

Halopiger goleimassiliensis IIH3 is a thermophilic, Gram-negative archaeon that was isolated from evaporitic sediment.

Gram-negative
thermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Natrialbales*
	Family	*Natrialbaceae*
	Genus	*Halopiger*
	Species	**Halopiger goleimassiliensis**
	Full Scientific Name (LPSN)	Halopiger goleimassiliensis corrig. Ikram et al. 2016

Synonym

Halopiger goleamassiliensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.807

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22797]

Culture medium

HALOPIGER MEDIUM (SG) (DSMZ Medium 1520)

[Ref.: #22797]

Culture medium growth

[Ref.: #22797]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22797]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22797]			growth	50 °C

[Ref.: #22797]

Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.896

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22797]	Sample type/isolated from	evaporitic sediment
[Ref.: #22797]	Geographic location (country and/or sea, region)	Ghardaia region, El Golea Lake
[Ref.: #22797]	Country	Algeria
[Ref.: #22797]	Country ISO 3 Code	DZA
[Ref.: #22797]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22797]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22797]	Halopiger goleimassiliensis 16S ribosomal RNA gene, partial sequence	KC430940	1444	ENA	1293048 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halopiger goleimassiliensis IIH3	GCA_000455345	scaffold	GenBank	1293048 tax ID	*

[Ref.: #22797]

GC-content

66.06 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halopiger goleimassiliensis IIH3 NCBI: GCA_000455345.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halopiger goleimassiliensis IIH3 NCBI: GCA_000455345.1
[Ref.: #69480]	motile	no	81.036	no
[Ref.: #69480]	flagellated	no	96.254	no
[Ref.: #69480]	gram-positive	no	97.179	no
[Ref.: #69480]	anaerobic	no	96.781	no
[Ref.: #69480]	aerobic	yes	88.71	no
[Ref.: #69480]	halophile	yes	87.314	no
[Ref.: #69480]	spore-forming	no	92.187	no
[Ref.: #69480]	thermophile	no	73.101	yes
[Ref.: #69480]	glucose-util	yes	89.093	no
[Ref.: #69480]	glucose-ferment	no	83.551	no

Availability in culture collections External links

[Ref.: #22797]

Culture collection no.

DSM 27562, CSUR P3036

[Ref.: #89979]

SI-ID 407628

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22797

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27562

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89979

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407628.1 )

* These data were automatically processed and therefore are not curated

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