Name: Vogesella oryzae L3B39
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131563

Type strain:

Species: Vogesella oryzae

Strain Designation: L3B39

Culture col. no.: DSM 28780, LMG 28272

Strain history: <- N. Ramesh Kumar, Nat. Inst. of Interdisciplinary Science and Technol., Thiruvananthapuram, Kerala, India; L3B39

NCBI tax ID(s): 1735285 (species)

Special Collections

DSMZ

Other strains from Vogesella oryzae

Vogesella oryzae L3B39 is a bacterium that was isolated from rice rhizosphere.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Chromobacteriaceae*
	Genus	*Vogesella*
	Species	**Vogesella oryzae**
	Full Scientific Name (LPSN)	Vogesella oryzae Rameshkumar et al. 2017

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #22790]

Intellectual property rights:

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22790]	Sample type/isolated from	rice rhizosphere
[Ref.: #22790]	Geographic location (country and/or sea, region)	Kerala
[Ref.: #22790]	Country	India
[Ref.: #22790]	Country ISO 3 Code	IND
[Ref.: #22790]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR363129 (>99% sequence identity) for Vogesella oryzae subclade from Microbeatlas

Aquatic Samples	188
Soil Samples	50
Animal Samples	28
Plant Samples	21
Total Samples	287

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22790]	Vogesella oryzae strain L3B39 16S ribosomal RNA gene, partial sequence	KR363129	1484	GenBank ENA	1735285 tax ID

Availability in culture collections External links

[Ref.: #22790]

Culture collection no.

DSM 28780, LMG 28272

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Vogesella oryzae sp. nov., isolated from the rhizosphere of saline tolerant pokkali rice.	Rameshkumar N, Lang E, Tanaka N	Syst Appl Microbiol	10.1016/j.syapm.2015.10.003	2015	*
Genetics	Draft Genome Sequence of Vogesella oryzae L3B39(T), Isolated from the Rhizosphere of Saline-Tolerant Pokkali Rice.	Kangale LJ, Levasseur A, Anani H, Raoult D, Ghigo E, Fournier PE	Microbiol Resour Announc	10.1128/MRA.00515-20	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22790

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28780

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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