Arcanobacterium pinnipediorum (DSM 28752, LMG 28298, 2710)

Name: Arcanobacterium pinnipediorum (DSM 28752, LMG 28298, 2710)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131544

Type strain

Strain Designation 2710

Culture col. no. DSM 28752 LMG 28298 2710

NCBI tax ID(s) 1503041

Special Collections DSMZ

Links

Arcanobacterium pinnipediorum 2710 is a mesophilic prokaryote that was isolated from anal swab of a free-living harbour seal .

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403382

LMG 28298,DSM 28752

@ref 20215

Last LPSN update 2025-12-16 10:01:16

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Actinomycetales

Family Actinomycetaceae

Genus Arcanobacterium

Species Arcanobacterium pinnipediorum

Full scientific name Arcanobacterium pinnipediorum Sammra et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	96.2
125439		96.5
125438		91.85

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22771	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22771	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.2

Spore formation

@ref	Spore formation	Confidence
125439		94.9

Murein

@ref	Murein short key	Type
22771	A11.51	A5alpha L-Lys-L-Lys-D-Glu

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	+		from API rID32A
68380	L-arginine arylamidase	+		from API rID32A
68380	leucine arylamidase	+	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68380	proline-arylamidase	+	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
22771	-	-	-	+	-	+	-	-	-	+	-	-	-	-	-	-	-	+	+	+/-	+/-	+	+	+/-	+	+	+/-	-	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	#Swab
#Host Body-Site	#Gastrointestinal tract	#Rectum

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
22771	anal swab of a free-living harbour seal (Phoca vitulina)	Phoca vitulina	North Sea	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence KJ596349 (>99% sequence identity) for Arcanobacterium pinnipediorum from Microbeatlas

Aquatic Samples	3
Soil Samples
Animal Samples	39
Plant Samples
Total Samples	42

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2397316v1 assembly for Arcanobacterium pinnipediorum DSM 28752	complete	GCA_023973165	1503041.3	8045818143	1503041	95.99

Genome browser: GCA_023973165

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22771	Arcanobacterium pinnipediorum strain 2710 16S ribosomal RNA gene, partial sequence	KJ596349	1348		1503041
124043	Arcanobacterium pinnipediorum strain DSM 28752 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence.	MG934212	583		1503041

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Arcanobacterium pinnipediorum DSM 28752
NCBI: GCA_023973165

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.90	no
125439	motility	BacteriaNetⓘ	no	96.50	no
125439	gram_stain	BacteriaNetⓘ	positive	96.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Arcanobacterium pinnipediorum DSM 28752
NCBI: GCA_023973165.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.05	no
125438	anaerobic	anaerobicⓘ	no	78.48	no
125438	aerobic	aerobicⓘ	no	79.44	no
125438	spore-forming	spore-formingⓘ	no	89.92	no
125438	thermophilic	thermophileⓘ	no	93.20	no
125438	flagellated	motile2+ⓘ	no	91.85	no

Literature

Title	Authors	Journal	DOI	Year
Arcanobacterium pinnipediorum Strain DSM 28752 Isolated from a Harbour Seal: Complete Genome Sequence.	Borowiak M, Kreitlow A, Malorny B, Alssahen M, Lammler C, Prenger-Berninghoff E, Ewers C, Siebert U, Plotz M, Abdulmawjood A.	Microbiol Resour Announc	10.1128/mra.01180-22	2023
First isolation of Arcanobacterium pinnipediorum from a grey seal pup (Halichoerus grypus) in the UK.	Alssahen M, Foster G, Hassan AA, Rau J, Lammler C, Prenger-Berninghoff E, Eisenberg T, Robinson M, Abdulmawjood A.	Folia Microbiol (Praha)	10.1007/s12223-021-00932-7	2022
Genome Sequence Comparisons between Small and Large Colony Phenotypes of Equine Clinical Isolates of Arcanobacterium hippocoleae.	Ayalew LE, Mekuria ZH, Despres B, Saab ME, Ojha S.	Animals (Basel)	10.3390/ani14111609	2024
Further characteristics of Arcanobacterium pinnipediorum DSM 28752(T) and Arcanobacterium wilhelmae DSM 102162(T), two novel species of genus Arcanobacterium.	Sammra O, Rau J, Wickhorst J, Alssahen M, Hassan AA, Lammler C, Prenger-Berninghoff E, Abdulmawjood A	Folia Microbiol (Praha)	10.1007/s12223-018-0610-7	2018
Arcanobacterium pinnipediorum sp. nov., isolated from a harbour seal.	Sammra O, Balbutskaya A, Ulbegi-Mohyla H, Nagib S, Lammler C, Kampfer P, Glaeser SP, Golke J, Busse HJ, Prenger-Berninghoff E, Siebert U, Abdulmawjood A, Klein G	Int J Syst Evol Microbiol	10.1099/ijsem.0.000609	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22771	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28752
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Arcanobacterium pinnipediorum (DSM 28752, LMG 28298, 2710)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Murein

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_023973165

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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