Name: Arcanobacterium pinnipediorum 2710
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131544

Type strain:

Species: Arcanobacterium pinnipediorum

Strain Designation: 2710

Culture col. no.: DSM 28752, LMG 28298

Strain history: <- O. Sammra, Univ. Giessen, Germany; 2710 <- R. Weiss

NCBI tax ID(s): 1503041 (species)

SI-ID 403382

DSM 28752

Special Collections

DSMZ

Section

When using BacDive for research please cite our paper

Arcanobacterium pinnipediorum 2710 is a mesophilic bacterium that was isolated from anal swab of a free-living harbour seal .

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Actinomycetales*
	Family	*Actinomycetaceae*
	Genus	*Arcanobacterium*
	Species	**Arcanobacterium pinnipediorum**
	Full Scientific Name (LPSN)	Arcanobacterium pinnipediorum Sammra et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Gram stain	positive Confidence in %96.2

[Ref.: #125439]	Motility	no Confidence in %96.5
[Ref.: #125438]	Motility	no Confidence in %91.85

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22771]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #22771]

Culture medium growth

[Ref.: #22771]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22771]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22771]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

obligate aerobe Confidence in %97.2

[Ref.: #125439]

Ability of spore formation

no Confidence in %94.9

[Ref.: #22771]	Murein short key	A11.51
[Ref.: #22771]	Murein types	A5alpha L-Lys-L-Lys-D-Glu

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	+		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucine arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #22771]	14190	-	-	-	+	-	+	-	-	-	+	-	-	-	-	-	-	-	+	+	+/-	+/-	+	+	+/-	+	+	+/-	-	+/-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22771]	Sample type/isolated from	anal swab of a free-living harbour seal (Phoca vitulina)
[Ref.: #22771]	Host species	Phoca vitulina
[Ref.: #22771]	Geographic location (country and/or sea, region)	North Sea
[Ref.: #22771]	Country	Germany
[Ref.: #22771]	Country ISO 3 Code	DEU
[Ref.: #22771]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Swab
#Host Body-Site	#Gastrointestinal tract	#Rectum

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ596349 (>99% sequence identity) for Arcanobacterium pinnipediorum from Microbeatlas

Aquatic Samples	3
Soil Samples
Animal Samples	39
Plant Samples
Total Samples	42

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22771]	Arcanobacterium pinnipediorum strain 2710 16S ribosomal RNA gene, partial sequence	KJ596349	1348	GenBank ENA	1503041 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Arcanobacterium pinnipediorum DSM 28752	GCA_023973165	complete	GenBank ENA	1503041 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Arcanobacterium pinnipediorum DSM 28752 NCBI: GCA_023973165.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	88.045	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	78.476	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	79.44	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	89.918	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	93.2	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	91.85	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Arcanobacterium pinnipediorum DSM 28752 NCBI: GCA_023973165
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	94.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	96.5
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	96.2
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	97.2

Availability in culture collections External links

[Ref.: #22771]

Culture collection no.

DSM 28752, LMG 28298

[Ref.: #89958]

SI-ID 403382

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arcanobacterium pinnipediorum sp. nov., isolated from a harbour seal.	Sammra O, Balbutskaya A, Ulbegi-Mohyla H, Nagib S, Lammler C, Kampfer P, Glaeser SP, Golke J, Busse HJ, Prenger-Berninghoff E, Siebert U, Abdulmawjood A, Klein G	Int J Syst Evol Microbiol	10.1099/ijsem.0.000609	2015	*
Phylogeny	Further characteristics of Arcanobacterium pinnipediorum DSM 28752(T) and Arcanobacterium wilhelmae DSM 102162(T), two novel species of genus Arcanobacterium.	Sammra O, Rau J, Wickhorst J, Alssahen M, Hassan AA, Lammler C, Prenger-Berninghoff E, Abdulmawjood A	Folia Microbiol (Praha)	10.1007/s12223-018-0610-7	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22771

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28752

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89958

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403382.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Arcanobacterium pinnipediorum DSM 28752

Arcanobacterium pinnipediorum DSM 28752

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