Demequina subtropica (DSM 28145, H12-128, NBRC 109396)

Name: Demequina subtropica (DSM 28145, H12-128, NBRC 109396)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131541

Type strain

Strain Designation H12-128, HI12-128

Culture col. no. DSM 28145 H12-128 NBRC 109396 HI12-128

NCBI tax ID(s) 1638989

Special Collections DSMZ

Links

Demequina subtropica H12-128 is a mesophilic prokaryote that was isolated from rhizosphere soil of mangrove.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403939

NBRC 109396,DSM 28145

@ref 20215

Last LPSN update 2025-12-16 10:01:16

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Demequinaceae

Genus Demequina

Species Demequina subtropica

Full scientific name Demequina subtropica (Hamada et al. 2015) Nouioui et al. 2018

Synonyms (1)

Lysinimicrobium subtropicum

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	94.7

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22768	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22768	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil
#Host	#Plants	-
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22768	rhizosphere soil of mangrove	Okinawa, Iriomote Island	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC042209 (>99% sequence identity) for Demequina from Microbeatlas

Aquatic Samples	11
Soil Samples	17
Animal Samples	15
Plant Samples
Total Samples	43

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22768	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM97123v1 assembly for Demequina subtropica NBRC 109396	scaffold	GCA_000971235	1536638.3	2663763161	1638989	72.98

Genome browser: GCA_000971235

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22768	Lysinimicrobium subtropicum gene for 16S ribosomal RNA, partial sequence	LC042209	1476		1638989

GC content

@ref	GC-content (mol%)	Method
22768	71.6	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Demequina subtropica NBRC 109396
NCBI: GCA_000971235

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	67.40	no
125439	motility	BacteriaNetⓘ	no	58.30	no
125439	gram_stain	BacteriaNetⓘ	positive	94.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Demequina subtropica NBRC 109396
NCBI: GCA_000971235.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	85.93	no
125438	anaerobic	anaerobicⓘ	no	88.01	no
125438	aerobic	aerobicⓘ	yes	59.40	no
125438	spore-forming	spore-formingⓘ	no	68.07	no
125438	thermophilic	thermophileⓘ	no	95.83	no
125438	flagellated	motile2+ⓘ	no	59.87	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Proposal of nine novel species of the genus Lysinimicrobium and emended description of the genus Lysinimicrobium.	Hamada M, Shibata C, Saitou S, Tamura T, Komaki H, Ichikawa N, Oguchi A, Hosoyama A, Fujita N, Yamamura H, Hayakawa M, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijsem.0.000587	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22768	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28145
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Demequina subtropica (DSM 28145, H12-128, NBRC 109396)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000971235

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media