Demequina soli (DSM 28151, H12-122, NBRC 109394)

Name: Demequina soli (DSM 28151, H12-122, NBRC 109394)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131540

Type strain

Strain Designation H12-122, HI12-122

Culture col. no. DSM 28151 H12-122 NBRC 109394 HI12-122

NCBI tax ID(s) 1638987

Special Collections DSMZ

History DSMZ <- M. Hamada, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Kisarazu, Japan; HI12-122

Links

Demequina soli H12-122 is a bacterium that was isolated from mangrove forest soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 407191

NBRC 109394,DSM 28151

@ref 20215

Last LPSN update 2026-05-29 08:37:38

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Demequinaceae

Genus Demequina

Species Demequina soli

Full scientific name Demequina soli (Hamada et al. 2015) Nouioui et al. 2018

Synonyms (1)

Lysinimicrobium soli

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	90.512

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22767	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22767	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.421

Spore formation

@ref	Spore formation	Confidence
125439		94.275

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22767	mangrove forest soil	Okinawa, Iriomote Island	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC042207 (>99% sequence identity) for Demequina from Microbeatlas

Aquatic Samples	48
Soil Samples	61
Animal Samples	137
Plant Samples	6
Total Samples	252

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22767	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM97119v1 assembly for Demequina soli NBRC 109394	scaffold	GCA_000971195	1536636.3	2663762912	1638987	73.9

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22767	Lysinimicrobium soli gene for 16S ribosomal RNA, partial sequence	LC042207	1478		1638987

GC content

@ref	GC-content (mol%)	Method
22767	72.3	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM97119v1 assembly for Demequina soli NBRC 109394
BV-BRC: 1536636.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.42	no
125439	gram_stain	BacteriaNetⓘ	positive	88.07	no
125439	motility	BacteriaNetⓘ	no	64.97	no
125439	spore_formation	BacteriaNetⓘ	no	94.28	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Demequina soli NBRC 109394
NCBI: GCA_000971195.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.51	no
125438	anaerobic	anaerobicⓘ	no	93.91	no
125438	aerobic	aerobicⓘ	yes	64.40	no
125438	spore-forming	spore-formingⓘ	no	67.22	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Proposal of nine novel species of the genus Lysinimicrobium and emended description of the genus Lysinimicrobium.	Hamada M, Shibata C, Saitou S, Tamura T, Komaki H, Ichikawa N, Oguchi A, Hosoyama A, Fujita N, Yamamura H, Hayakawa M, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijsem.0.000587	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22767	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28151
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Demequina soli (DSM 28151, H12-122, NBRC 109394)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000971195

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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