Name: Demequina soli H12-122
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131540

Type strain:

Species: Demequina soli

Strain Designation: H12-122, HI12-122

Culture col. no.: DSM 28151, NBRC 109394

Strain history: <- M. Hamada, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Kisarazu, Japan; HI12-122

NCBI tax ID(s): 1638987 (species)

SI-ID 407191

DSM 28151

Section

Demequina soli H12-122 is a mesophilic bacterium that was isolated from mangrove forest soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Demequinaceae*
	Genus	*Demequina*
	Species	**Demequina soli**
	Full Scientific Name (LPSN)	Demequina soli (Hamada et al. 2015) Nouioui et al. 2018

Synonym

Lysinimicrobium soli

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %96.071

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22767]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #22767]

Culture medium growth

[Ref.: #22767]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22767]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22767]			growth	28 °C

[Ref.: #22767]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22767]	Sample type/isolated from	mangrove forest soil
[Ref.: #22767]	Geographic location (country and/or sea, region)	Okinawa, Iriomote Island
[Ref.: #22767]	Country	Japan
[Ref.: #22767]	Country ISO 3 Code	JPN
[Ref.: #22767]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC042207 (>99% sequence identity) for Demequina from Microbeatlas

Aquatic Samples	48
Soil Samples	61
Animal Samples	137
Plant Samples	6
Total Samples	252

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22767]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22767]	Lysinimicrobium soli gene for 16S ribosomal RNA, partial sequence	LC042207	1478	ENA	1638987 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Demequina soli NBRC 109394	GCA_000971195	scaffold	GenBank	1638987 tax ID	*
[Ref.: #66792]	Lysinimicrobium sp. NBRC 109394	1536636.3	wgs	PATRIC	1638987 tax ID	*
[Ref.: #66792]	Lysinimicrobium soli NBRC 109394	2663762912	draft	JGI IMG/M	1638987 tax ID	*

[Ref.: #22767]

GC-content

72.3 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Demequina soli NBRC 109394 NCBI: GCA_000971195.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Demequina soli NBRC 109394 NCBI: GCA_000971195.1
[Ref.: #69480]	motile	no	92.278	no
[Ref.: #69480]	flagellated	no	97.601	no
[Ref.: #69480]	gram-positive	yes	93.574	no
[Ref.: #69480]	anaerobic	no	98.078	no
[Ref.: #69480]	aerobic	no	59.326	no
[Ref.: #69480]	halophile	no	81.993	no
[Ref.: #69480]	spore-forming	no	88.494	no
[Ref.: #69480]	glucose-util	yes	85.17	no
[Ref.: #69480]	thermophile	no	98.428	yes
[Ref.: #69480]	glucose-ferment	no	66.158	no

Availability in culture collections External links

[Ref.: #22767]

Culture collection no.

DSM 28151, NBRC 109394

[Ref.: #89954]

SI-ID 407191

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of nine novel species of the genus Lysinimicrobium and emended description of the genus Lysinimicrobium.	Hamada M, Shibata C, Saitou S, Tamura T, Komaki H, Ichikawa N, Oguchi A, Hosoyama A, Fujita N, Yamamura H, Hayakawa M, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijsem.0.000587	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22767

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28151

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89954

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407191.1 )

* These data were automatically processed and therefore are not curated

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Demequina soli NBRC 109394

Demequina soli NBRC 109394

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