Name: Demequina iriomotensis H12-143
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131535

Type strain:

Species: Demequina iriomotensis

Strain Designation: H12-143, HI12-143

Culture col. no.: DSM 28146, NBRC 109399

Strain history: <- M. Hamada, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Kisarazu, Japan; HI12-143

NCBI tax ID(s): 1536641 (species)

SI-ID 407078

DSM 28146

Section

Demequina iriomotensis H12-143 is a mesophilic, Gram-positive bacterium that was isolated from rhizosphere soil of mangrove.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Demequinaceae*
	Genus	*Demequina*
	Species	**Demequina iriomotensis**
	Full Scientific Name (LPSN)	Demequina iriomotensis (Hamada et al. 2015) Nouioui et al. 2018

Synonym

Lysinimicrobium iriomotense

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22762]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #22762]

Culture medium growth

[Ref.: #22762]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22762]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22762]			growth	28 °C

[Ref.: #22762]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22762]	Sample type/isolated from	rhizosphere soil of mangrove
[Ref.: #22762]	Geographic location (country and/or sea, region)	Okinawa, Iriomote Island
[Ref.: #22762]	Country	Japan
[Ref.: #22762]	Country ISO 3 Code	JPN
[Ref.: #22762]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil
#Host	#Plants	-
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC042212 (>99% sequence identity) for Demequina from Microbeatlas

Aquatic Samples	215
Soil Samples	63
Animal Samples	176
Plant Samples	8
Total Samples	462

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22762]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22762]	Lysinimicrobium iriomotense gene for 16S ribosomal RNA, partial sequence	LC042212	1478	ENA	1536641 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Demequina iriomotensis NBRC 109399	GCA_000971395	contig	GenBank	1536641 tax ID	*
[Ref.: #66792]	Lysinimicrobium sp. NBRC 109399	1536641.3	wgs	PATRIC	1536641 tax ID	*
[Ref.: #66792]	Lysinimicrobium iriomotense NBRC 109399	2663762970	draft	JGI IMG/M	1536641 tax ID	*

[Ref.: #22762]

GC-content

71.9 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lysinimicrobium sp. NBRC 109399 PATRIC: 1536641.3
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lysinimicrobium sp. NBRC 109399 PATRIC: 1536641.3
[Ref.: #69480]	motile	yes	63.131	no
[Ref.: #69480]	gram-positive	yes	90.507	no
[Ref.: #69480]	anaerobic	no	98.334	no
[Ref.: #69480]	aerobic	no	52.227	no
[Ref.: #69480]	halophile	no	85.463	no
[Ref.: #69480]	spore-forming	no	85.934	no
[Ref.: #69480]	thermophile	no	98.437	no
[Ref.: #69480]	glucose-util	yes	85.601	no
[Ref.: #69480]	flagellated	no	87.388	no
[Ref.: #69480]	glucose-ferment	no	63.544	no

Availability in culture collections External links

[Ref.: #22762]

Culture collection no.

DSM 28146, NBRC 109399

[Ref.: #89949]

SI-ID 407078

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of nine novel species of the genus Lysinimicrobium and emended description of the genus Lysinimicrobium.	Hamada M, Shibata C, Saitou S, Tamura T, Komaki H, Ichikawa N, Oguchi A, Hosoyama A, Fujita N, Yamamura H, Hayakawa M, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijsem.0.000587	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22762

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28146

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89949

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407078.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Demequina iriomotensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Lysinimicrobium sp. NBRC 109399

Lysinimicrobium sp. NBRC 109399

Change proposal

Change proposal