Demequina gelatinilytica (DSM 28149, H12-44, NBRC 109390)

Name: Demequina gelatinilytica (DSM 28149, H12-44, NBRC 109390)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131534

Type strain

Strain Designation H12-44, HI12-44

Culture col. no. DSM 28149 H12-44 NBRC 109390 HI12-44

NCBI tax ID(s) 1638980

Special Collections DSMZ

History DSMZ <- M. Hamada, National Inst. of Technology & Evaluation, NBRC, Japan; HI12-44

Links

Demequina gelatinilytica H12-44 is a bacterium that was isolated from rhizosphere soil of mangrove.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404961

NBRC 109390,DSM 28149

@ref 20215

Last LPSN update 2026-05-29 08:37:38

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Demequinaceae

Genus Demequina

Species Demequina gelatinilytica

Full scientific name Demequina gelatinilytica (Hamada et al. 2015) Nouioui et al. 2018

Synonyms (1)

Lysinimicrobium gelatinilyticum

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	94.427

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22761	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
22761	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	94.438

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil
#Host	#Plants	-
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22761	rhizosphere soil of mangrove	Okinawa, Iriomote Island	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC042200 (>99% sequence identity) for Demequina from Microbeatlas

Aquatic Samples	11
Soil Samples	17
Animal Samples	15
Plant Samples	0
Total Samples	43

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22761	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM97111v1 assembly for Demequina gelatinilytica NBRC 109390	scaffold	GCA_000971115	1536632.3	2671180374	1638980	71.04

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22761	Lysinimicrobium gelatinilyticum gene for 16S ribosomal RNA, partial sequence	LC042200	1476		1638980

GC content

@ref	GC-content (mol%)	Method
22761	71.4	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM97111v1 assembly for Demequina gelatinilytica NBRC 109390
BV-BRC: 1536632.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.44	no
125439	gram_stain	BacteriaNetⓘ	positive	94.43	no
125439	motility	BacteriaNetⓘ	no	76.05	no
125439	spore_formation	BacteriaNetⓘ	yes	36.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Demequina gelatinilytica NBRC 109390
NCBI: GCA_000971115.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.33	no
125438	anaerobic	anaerobicⓘ	no	87.40	no
125438	aerobic	aerobicⓘ	yes	63.40	no
125438	spore-forming	spore-formingⓘ	no	67.39	no
125438	thermophilic	thermophileⓘ	no	96.33	no
125438	flagellated	motile2+ⓘ	no	60.87	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Proposal of nine novel species of the genus Lysinimicrobium and emended description of the genus Lysinimicrobium.	Hamada M, Shibata C, Saitou S, Tamura T, Komaki H, Ichikawa N, Oguchi A, Hosoyama A, Fujita N, Yamamura H, Hayakawa M, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijsem.0.000587	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22761	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28149
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Demequina gelatinilytica (DSM 28149, H12-44, NBRC 109390)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000971115

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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