Pseudomonas delhiensis (DSM 18900, CCUG 55753, CCM 7361)

Name: Pseudomonas delhiensis (DSM 18900, CCUG 55753, CCM 7361)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13153

Type strain

Strain Designation RLD-1

Culture col. no. DSM 18900 CCUG 55753 CCM 7361 MTCC 7601 CIP 109527 1 more

NCBI tax ID(s) 366289

Special Collections DSMZ CCUG CIP Literature strains

History <- R. Lal, Zoology, Univ. Delhi; RLD-1 CIP <- 2007, CCM <- R. Lal, Delhi Univ., Delhi, India: strain RLD-1

Links

Pseudomonas delhiensis RLD-1 is an aerobe, Gram-negative, motile prokaryote that was isolated from soil sample contaminated by polycylic aromatic compounds of fly ash dumping site.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 297307

MTCC 7601,CCM 7361,DSM 18900,LMG 24737,CCUG 55753,CIP 109527

@ref 20215

Last LPSN update 2026-02-09 11:21:03

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas delhiensis

Full scientific name Pseudomonas delhiensis Prakash et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31831	negative	1.5 µm	0.5 µm	rod-shaped
118885	negative			rod-shaped
125439	negative				96.9
125438	negative				98.485

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
37756	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
118885	CIP Medium 72			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
31831	positive	growth	04-40
31831	positive	optimum	37	mesophilic
37756	positive	growth	37	mesophilic
60717	positive	growth	30-37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31831	aerobe
60717	aerobe
118885	obligate aerobe
125438	aerobe	91.475

Spore formation

@ref	Spore formation	Confidence
31831
125439		97.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31831	NaCl	positive	optimum	5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31831	22599 ChEBI	arabinose	+	carbon source
31831	17057 ChEBI	cellobiose	+	carbon source
31831	23652 ChEBI	dextrin	+	carbon source
31831	28757 ChEBI	fructose	+	carbon source
31831	28260 ChEBI	galactose	+	carbon source
31831	17234 ChEBI	glucose	+	carbon source
31831	17754 ChEBI	glycerol	+	carbon source
31831	17716 ChEBI	lactose	+	carbon source
31831	29864 ChEBI	mannitol	+	carbon source
31831	17632 ChEBI	nitrate	+	reduction
118885	17632 ChEBI	nitrate	+	reduction
118885	16301 ChEBI	nitrite	+	reduction
31831	15963 ChEBI	ribitol	+	carbon source
31831	33942 ChEBI	ribose	+	carbon source
31831	30911 ChEBI	sorbitol	+	carbon source
31831	17992 ChEBI	sucrose	+	carbon source
31831	27082 ChEBI	trehalose	+	carbon source
31831	53426 ChEBI	tween 80	+	carbon source
31831	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
118885	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
31831	catalase	+	1.11.1.6
118885	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31831	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118885	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
31831	urease	+	3.5.1.5
118885	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118885	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	-
#Engineered	#Waste	#Dust (Ash)
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
7766	soil sample contaminated by polycylic aromatic compounds of fly ash dumping site			India	IND	Asia
60717	Fly ash dumping site of a thermal power plant	2006	Delhi	India	IND	Asia
118885	Thermal power plant, fly ash dumping site			India	IND	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7766	1	Risk group (German classification) According to TRBA 466
118885	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2706795031 annotated assembly for Pseudomonas delhiensis RLD-1	contig	GCA_900187975	366289.4	2706795031	366289	62.61
66792	IMG-taxon 2671180033 annotated assembly for Pseudomonas delhiensis CCM 7361	scaffold	GCA_900099945	366289.8	2671180033	366289	56.15

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31831	Pseudomonas delhiensis strain RLD-1 16S ribosomal RNA gene, partial sequence	DQ339153	1505		366289

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas delhiensis CCM 7361
NCBI: GCA_900099945

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.10	no
125439	motility	BacteriaNetⓘ	yes	89.70	no
125439	gram_stain	BacteriaNetⓘ	negative	96.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	56.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas delhiensis CCM 7361
NCBI: GCA_900099945.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.49	yes
125438	anaerobic	anaerobicⓘ	no	97.82	no
125438	aerobic	aerobicⓘ	yes	91.48	yes
125438	spore-forming	spore-formingⓘ	no	85.15	yes
125438	thermophilic	thermophileⓘ	no	99.80	yes
125438	flagellated	motile2+ⓘ	yes	89.25	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative Genomic Analysis of Three Pseudomonas Species Isolated from the Eastern Oyster (Crassostrea virginica) Tissues, Mantle Fluid, and the Overlying Estuarine Water Column.	Pathak A, Stothard P, Chauhan A.	Microorganisms	10.3390/microorganisms9030490	2021
Phylogeny	Pseudomonas panipatensis sp. nov., isolated from an oil-contaminated site.	Gupta SK, Kumari R, Prakash O, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.65401-0	2008
Phylogeny	Pseudomonas delhiensis sp. nov., from a fly ash dumping site of a thermal power plant.	Prakash O, Kumari K, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.64456-0	2007

References

#7766	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18900
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28097	IJSEM 527 2007 ( DOI 10.1099/ijs.0.64456-0 , PubMed 17329778 )
#31831	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28097
#37756	; Curators of the CIP;
#60717	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55753
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#118885	Collection of Institut Pasteur ; Curators of the CIP; CIP 109527
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Pseudomonas delhiensis (DSM 18900, CCUG 55753, CCM 7361)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900187975

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media