Name: Pseudomonas delhiensis RLD-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13153

Type strain:

Species: Pseudomonas delhiensis

Strain Designation: RLD-1

Culture col. no.: DSM 18900, CCUG 55753, CCM 7361, MTCC 7601, CIP 109527

Strain history: CIP <- 2007, CCM <- R. Lal, Delhi Univ., Delhi, India: strain RLD-1

NCBI tax ID(s): 366289 (species)

SI-ID 297307

CCM 7361, DSM 18900, LMG 24737, CCUG 55753, CIP 109527

Section

Pseudomonas delhiensis RLD-1 is an aerobe, Gram-negative, motile bacterium that was isolated from soil sample contaminated by polycylic aromatic compounds of fly ash dumping site.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas delhiensis**
	Full Scientific Name (LPSN)	Pseudomonas delhiensis Prakash et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31831]	Gram stain	negative
[Ref.: #118885]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #31831]	Cell length	1.5 µm

[Ref.: #31831]	Cell width	0.5 µm

[Ref.: #31831]	Cell shape	rod-shaped
[Ref.: #118885]	Cell shape	rod-shaped

[Ref.: #31831]	Motility	yes
[Ref.: #118885]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %97.189

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37756]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37756]

Culture medium growth

[Ref.: #37756]

Culture medium composition

expand / minimize

[Ref.: #118885]

Culture medium

CIP Medium 72

[Ref.: #118885]

Culture medium growth

[Ref.: #118885]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #31831]	growth	04-40 °C
[Ref.: #31831]	optimum	37 °C
[Ref.: #37756]	growth	37 °C
[Ref.: #60717]	growth	30-37 °C

[Ref.: #31831]	Temperature range	mesophilic
[Ref.: #37756]	Temperature range	mesophilic
[Ref.: #60717]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31831]	Oxygen tolerance	aerobe
[Ref.: #60717]	Oxygen tolerance	aerobe
[Ref.: #118885]	Oxygen tolerance	obligate aerobe

[Ref.: #31831]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.988

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31831]		NaCl		optimum	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31831]	arabinose ChEBI	+	carbon source
[Ref.: #31831]	cellobiose ChEBI	+	carbon source
[Ref.: #31831]	dextrin ChEBI	+	carbon source
[Ref.: #31831]	fructose ChEBI	+	carbon source
[Ref.: #31831]	galactose ChEBI	+	carbon source
[Ref.: #31831]	glucose ChEBI	+	carbon source
[Ref.: #31831]	glycerol ChEBI	+	carbon source
[Ref.: #31831]	lactose ChEBI	+	carbon source
[Ref.: #31831]	mannitol ChEBI	+	carbon source
[Ref.: #31831]	nitrate ChEBI	+	reduction
[Ref.: #118885]	nitrate ChEBI	+	reduction
[Ref.: #118885]	nitrite ChEBI	+	reduction
[Ref.: #31831]	ribitol ChEBI	+	carbon source
[Ref.: #31831]	ribose ChEBI	+	carbon source
[Ref.: #31831]	sorbitol ChEBI	+	carbon source
[Ref.: #31831]	sucrose ChEBI	+	carbon source
[Ref.: #31831]	trehalose ChEBI	+	carbon source
[Ref.: #31831]	tween 80 ChEBI	+	carbon source
[Ref.: #31831]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #118885]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31831]	catalase	+	1.11.1.6
[Ref.: #118885]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31831]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118885]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #31831]	urease	+	3.5.1.5
[Ref.: #118885]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118885]	11931	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7766]	Sample type/isolated from	soil sample contaminated by polycylic aromatic compounds of fly ash dumping site
[Ref.: #7766]	Country	India
[Ref.: #7766]	Country ISO 3 Code	IND
[Ref.: #7766]	Continent	Asia

[Ref.: #60717]	Sample type/isolated from	Fly ash dumping site of a thermal power plant
[Ref.: #60717]	Sampling date	2006
[Ref.: #60717]	Geographic location (country and/or sea, region)	Delhi
[Ref.: #60717]	Country	India
[Ref.: #60717]	Country ISO 3 Code	IND
[Ref.: #60717]	Continent	Asia

[Ref.: #118885]	Sample type/isolated from	Thermal power plant, fly ash dumping site
[Ref.: #118885]	Country	India
[Ref.: #118885]	Country ISO 3 Code	IND
[Ref.: #118885]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Engineered	#Waste	#Dust (Ash)
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7766]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118885]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31831]	Pseudomonas delhiensis strain RLD-1 16S ribosomal RNA gene, partial sequence	DQ339153	1505	GenBank	366289 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas delhiensis RLD-1	GCA_900187975	contig	GenBank	366289 tax ID	*
[Ref.: #66792]	Pseudomonas delhiensis CCM 7361	GCA_900099945	scaffold	GenBank	366289 tax ID	*
[Ref.: #66792]	Pseudomonas delhiensis strain CCM 7361	366289.8	wgs	PATRIC	366289 tax ID	*
[Ref.: #66792]	Pseudomonas delhiensis RLD-1	2706795031	draft	JGI IMG/M	366289 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudomonas delhiensis CCM 7361 NCBI: GCA_900099945.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas delhiensis CCM 7361 NCBI: GCA_900099945.1
[Ref.: #69480]	motile	yes	90.159	yes
[Ref.: #69480]	flagellated	yes	78.992	no
[Ref.: #69480]	gram-positive	no	98.266	yes
[Ref.: #69480]	anaerobic	no	97.341	no
[Ref.: #69480]	aerobic	yes	89.291	yes
[Ref.: #69480]	halophile	no	84.797	no
[Ref.: #69480]	spore-forming	no	94.131	yes
[Ref.: #69480]	glucose-ferment	no	90.446	no
[Ref.: #69480]	thermophile	no	99.796	yes
[Ref.: #69480]	glucose-util	yes	89.714	yes

Availability in culture collections External links

[Ref.: #7766]

Culture collection no.

DSM 18900, CCUG 55753, CCM 7361, MTCC 7601, CIP 109527

[Ref.: #82361]

SI-ID 297307

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas panipatensis sp. nov., isolated from an oil-contaminated site.	Gupta SK, Kumari R, Prakash O, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.65401-0	2008	*
Phylogeny	Pseudomonas delhiensis sp. nov., from a fly ash dumping site of a thermal power plant.	Prakash O, Kumari K, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.64456-0	2007	*

References

#7766

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18900

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31831

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28097 (see below)

#37756 ; Curators of the CIP;
#60717 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55753

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82361

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297307.1 )

#118885 Collection of Institut Pasteur ; Curators of the CIP; CIP 109527

#28097

IJSEM 527 2007 ( DOI 10.1099/ijs.0.64456-0 , PubMed 17329778 )

* These data were automatically processed and therefore are not curated

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Pseudomonas delhiensis CCM 7361

Pseudomonas delhiensis CCM 7361

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