Name: Muricomes intestini 2-PG-424-CC-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131529

Type strain:

Species: Muricomes intestini

Strain Designation: 2-PG-424-CC-1

Culture col. no.: DSM 29489, KCTC 15545

Strain history: <- Barbel Fosel, DSM

NCBI tax ID(s): 1796634 (species)

SI-ID 403591

DSM 29489

Section

Muricomes intestini 2-PG-424-CC-1 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from caecal content; TNF^deltaARE/+ C57BL/6 mouse.

rod-shaped
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Muricomes*
	Species	**Muricomes intestini**
	Full Scientific Name (LPSN)	Muricomes intestini Lagkouvardos et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #22756]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22756]

Culture medium

WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)

[Ref.: #22756]

Culture medium growth

[Ref.: #22756]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22756]

Culture medium composition

expand / minimize

[Ref.: #22756]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #22756]

Culture medium growth

[Ref.: #22756]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22756]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22756]			growth	37 °C
[Ref.: #67771]			growth	37 °C

[Ref.: #22756]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22756]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69481]	Ability of spore formation	yes Confidence in %96
[Ref.: #69480]	Ability of spore formation	no Confidence in %98.807

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #22756]	12956	-	-	-	-	-	+	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-
[Ref.: #22756]	12861	-	-	-	-	-	+	-	-	-	-	+/-	-	-	+/-	not determinedn.d.	-	-	-	+	-	-	-	-	-	-	-	-	-	-
[Ref.: #22756]	12507	-	-	-	-	-	+	-	-	-	-	-	-	-	+/-	not determinedn.d.	-	-	-	+	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22756]	Sample type/isolated from	caecal content; TNF^deltaARE/+ C57BL/6 mouse
[Ref.: #22756]	Geographic location (country and/or sea, region)	Freising
[Ref.: #22756]	Country	Germany
[Ref.: #22756]	Country ISO 3 Code	DEU
[Ref.: #22756]	Continent	Europe

[Ref.: #67771]	Sample type/isolated from	From mouse instine, caecal content; TNFdeltaARE/+ C57BL/6 mouse
[Ref.: #67771]	Geographic location (country and/or sea, region)	Freising
[Ref.: #67771]	Country	Germany
[Ref.: #67771]	Country ISO 3 Code	DEU
[Ref.: #67771]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Gastrointestinal tract	#Large intestine
#Host Body Product	#Gastrointestinal tract	#Caecal content

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR364770 (>99% sequence identity) for Muricomes intestini subclade from Microbeatlas

Aquatic Samples	24
Soil Samples	187
Animal Samples	852
Plant Samples	14
Total Samples	1077

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22756]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22756]	Muricomes intestini strain 2PG-424-CC-1 16S ribosomal RNA gene, partial sequence	KR364770	1431	ENA	1796634 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Muricomes intestini DSM 29489	GCA_004346165	contig	GenBank	1796634 tax ID	*
[Ref.: #66792]	Muricomes intestini strain DSM 29489	1796634.3	wgs	PATRIC	1796634 tax ID	*
[Ref.: #66792]	Muricomes intestini DSM 29489	2784746785	draft	JGI IMG/M	1796634 tax ID	*

[Ref.: #22756]	GC-content	43.1 mol%	sequence analysis
[Ref.: #67771]	GC-content	43.1 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Muricomes intestini strain DSM 29489 PATRIC: 1796634.3
[Ref.: #69481]	spore-forming	yes	96	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Muricomes intestini strain DSM 29489 PATRIC: 1796634.3
[Ref.: #69480]	motile	yes	77.837	no
[Ref.: #69480]	gram-positive	yes	85.56	yes
[Ref.: #69480]	anaerobic	yes	99.31	yes
[Ref.: #69480]	aerobic	no	98.884	yes
[Ref.: #69480]	halophile	no	91.825	no
[Ref.: #69480]	spore-forming	yes	68.306	no
[Ref.: #69480]	glucose-util	yes	91.587	no
[Ref.: #69480]	flagellated	no	68.858	no
[Ref.: #69480]	thermophile	no	93.426	yes
[Ref.: #69480]	glucose-ferment	yes	73.227	no

Availability in culture collections External links

[Ref.: #22756]

Culture collection no.

DSM 29489, KCTC 15545

[Ref.: #89943]

SI-ID 403591

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22756

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29489

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89943

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403591.1 )

* These data were automatically processed and therefore are not curated

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Muricomes intestini strain DSM 29489

Muricomes intestini strain DSM 29489

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