Extibacter muris SJ-24 is an anaerobe, rod-shaped bacterium that was isolated from caecal content; TNFdeltaARE/+ C57BL/6 mouse.
rod-shaped anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
Last LPSN update
2026-05-29 08:37:38 |
| Domain Bacteria |
| Phylum Bacillota |
| Class Clostridia |
| Order Eubacteriales |
| Family Lachnospiraceae |
| Genus Extibacter |
| Species Extibacter muris |
| Full scientific name Extibacter muris Lagkouvardos et al. 2017 |
| BacDive ID | Other strains from Extibacter muris (1) | Type strain |
|---|---|---|
| 131520 | E. muris 40ccB-5824-ARE, JM-40, DSM 28560, KCTC 15546 (type strain) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 22748 | WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) | Medium recipe at MediaDive  | Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water | ||
| 22748 | CHOPPED MEAT MEDIUM (DSMZ Medium 78) | Medium recipe at MediaDive | Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 22748 | positive | growth | 37 |
| 22748 | Oxygen toleranceanaerobe |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68367 | 17057 ChEBI | cellobiose | - | builds acid from | from API 20A |
| 68367 | 17634 ChEBI | D-glucose | - | builds acid from | from API 20A |
| 68367 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 20A |
| 68367 | 16024 ChEBI | D-mannose | - | builds acid from | from API 20A |
| 68367 | 65327 ChEBI | D-xylose | - | builds acid from | from API 20A |
| 68367 | 4853 ChEBI | esculin | - | hydrolysis | from API 20A |
| 68367 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20A |
| 68367 | 17754 ChEBI | glycerol | - | builds acid from | from API 20A |
| 68367 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 20A |
| 68367 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 20A |
| 68367 | 17716 ChEBI | lactose | - | builds acid from | from API 20A |
| 68367 | 17306 ChEBI | maltose | - | builds acid from | from API 20A |
| 68367 | 6731 ChEBI | melezitose | - | builds acid from | from API 20A |
| 68367 | 16634 ChEBI | raffinose | - | builds acid from | from API 20A |
| 68367 | 17814 ChEBI | salicin | - | builds acid from | from API 20A |
| 68367 | 30911 ChEBI | sorbitol | - | builds acid from | from API 20A |
| 68367 | 17992 ChEBI | sucrose | - | builds acid from | from API 20A |
| 68367 | 27082 ChEBI | trehalose | - | builds acid from | from API 20A |
| 68367 | 27897 ChEBI | tryptophan | - | energy source | from API 20A |
| 68367 | 16199 ChEBI | urea | - | hydrolysis | from API 20A |
| @ref | IND | URE | GLU | MAN | LAC | SAC | MAL | SAL | XYL | ARA | GEL | ESC | GLY | CEL | MNE | MLZ | RAF | SOR | RHA | TRE | CAT | Spores presentSPOR | GramGRAM | Morphology coccus="+" rod="-"COCC | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22748 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | |
| 22748 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 22748 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Mammals | #Muridae (Mouse/Rat) | |
| #Host Body-Site | #Gastrointestinal tract | #Large intestine | |
| #Host Body Product | #Gastrointestinal tract | #Caecal content |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|
| 22748 | caecal content; TNFdeltaARE/+ C57BL/6 mouse | Freising | Germany | DEU | Europe |
Global distribution of 16S sequence KU196087 (>99% sequence identity) for Extibacter muris subclade from Microbeatlas 
 Aquatic Samples |
6 |
 Soil Samples |
0 |
 Animal Samples |
515 |
 Plant Samples |
1 |
| Total Samples | 522 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM2544765v1 assembly for Extibacter muris DSM 28561 | contig | GCA_025447655   | 1796622.11  | 8062799102  | 1796622 | 50.53 | |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 22748 | Extibacter muris strain DSM 28561 16S ribosomal RNA gene, partial sequence | KU196087 | 1392 |  | 1796622 |
| Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|
| Strain-dependent induction of primary bile acid 7-dehydroxylation by cholic acid. | Vico-Oton E, Volet C, Jacquemin N, Dong Y, Hapfelmeier S, Meibom KL, Bernier-Latmani R. | BMC Microbiol | 10.1186/s12866-024-03433-y | 2024 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive131521.20260601.11
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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