Pseudomonas simiae (DSM 18861, CCUG 50988, CECT 7078)

Name: Pseudomonas simiae (DSM 18861, CCUG 50988, CECT 7078)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13152

Type strain

Strain Designation OLi

Culture col. no. DSM 18861 CCUG 50988 CECT 7078 OLi CIP 109526

NCBI tax ID(s) 321846

Special Collections DSMZ CCUG CIP

Links

Pseudomonas simiae OLi is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from lung of female monkey with pneumonitis and pneumonia.

Gram-negative motile rod-shaped aerobe mesophilic animal pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 292913

CCUG 50988,CECT 7078,DSM 18861,CIP 109526,LMG 28180

@ref 20215

Last LPSN update 2025-12-16 09:50:01

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas simiae

Full scientific name Pseudomonas simiae Vela et al. 2006

BacDive ID	Other strains from **Pseudomonas simiae** (1)	Type strain
156848	P. simiae CCUG 66056

Morphology

Cell morphology

@ref	Gram stain	Cell shape
122615	negative	rod-shaped
125438
125438	negative
125439	negative

Culture and growth conditions

Culture medium

@ref	Name	Composition
37755	MEDIUM 72- for trypto casein soja agar	Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122615	CIP Medium 72
7751	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
7751	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7751	positive	growth	30	mesophilic
37755	positive	growth	30	mesophilic
59076	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
59076	aerobe
122615	obligate aerobe
125438	aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.2

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	+	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
122615	17632 ChEBI	nitrate	+	reduction
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
122615	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
122615	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	+	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122615	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68369	gelatinase	+		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122615	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
122615	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122615	-	-	+	-	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
7751	+	-	-	+	-	-	+	-	+	+	+	+	-	-	+	+	-	+	+	-	+
7751	+	-	-	+	-	-	+	-	+	+	+	+	+	-	+	+	-	+	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Disease
#Infection	#Inflammation
#Host	#Mammals
#Host Body-Site	#Oral cavity and airways

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
7751	lung of female monkey (Callithrix geoffroyi) with pneumonitis and pneumonia	Callithrix geoffroyi	Spain	ESP	Europe
59076	Monkey brain (Callithrix geoffroyi)		Spain	ESP	Europe
122615	Animal, Monkeys liver with acute bronchopneumonia, bacteraemia		Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ936933 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	976
Soil Samples	555
Animal Samples	2173
Plant Samples	1759
Total Samples	5463

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
7751		2	Risk group (German classification) According to TRBA 466
122615		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2663762772 annotated assembly for Pseudomonas simiae CCUG 50988	scaffold	GCA_900111895	321846.20	2663762772	321846	73.43
66792	ASM173061v1 assembly for Pseudomonas simiae CCUG 50988	contig	GCA_001730615	321846.11	2917126018	321846	72.82

Genome browser: GCA_900111895

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7751	Pseudomonas simiae partial 16S rRNA gene, type strain OLiT	AJ936933	1345		321846

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas simiae CCUG 50988
NCBI: GCA_900111895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.20	no
125439	motility	BacteriaNetⓘ	yes	86.50	no
125439	gram_stain	BacteriaNetⓘ	negative	98.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas simiae CCUG 50988
NCBI: GCA_900111895.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	98.86	yes
125438	aerobic	aerobicⓘ	yes	94.24	yes
125438	spore-forming	spore-formingⓘ	no	88.38	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	92.89	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	A Novel Strain of the Cyanobacterial Growth-promoting Bacterium, Rhodococcus sp. AF2108, Enhances the Growth of Synechococcus elongatus.	Tan PY, Kato Y, Konishi M.	Microbes Environ	10.1264/jsme2.me24050	2024
	Complete Genome Sequence of a Pseudomonas simiae Strain with Biocontrol Potential against Aphanomyces Root Rot.	Godebo AT, MacKenzie KD, Walley FL, Germida JJ, Yost CK.	Microbiol Resour Announc	10.1128/mra.00222-21	2021
Genetics	The multidrug-resistant Pseudomonas fluorescens strain: a hidden threat in boar semen preservation.	Xiong Z, Hong Z, Li X, Gao D, Wang L, Liu S, Zhao J, Li X, Qian P.	Front Microbiol	10.3389/fmicb.2023.1279630	2023
Phylogeny	Pseudomonas simiae sp. nov., isolated from clinical specimens from monkeys (Callithrix geoffroyi).	Vela AI, Gutierrez MC, Falsen E, Rollan E, Simarro I, Garcia P, Dominguez L, Ventosa A, Fernandez-Garayzabal JF	Int J Syst Evol Microbiol	10.1099/ijs.0.64378-0	2006

References

#7751	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18861
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#37755	; Curators of the CIP;
#59076	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50988
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122615	Collection of Institut Pasteur ; Curators of the CIP; CIP 109526
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas simiae (DSM 18861, CCUG 50988, CECT 7078)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900111895

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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