Name: Alistipes timonensis CC-5826-WT-bac
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131513

Type strain:

Species: Alistipes timonensis

Strain Designation: CC-5826-WT-bac

Culture col. no.: DSM 27924

Strain history: <- T. Clavel, Research Center for Nutrition and Food Sci. (ZIEL), TU Munich, Germany; CC-5826-WT-bac <- J. Manowsky

NCBI tax ID(s): 1872444 (species)

SI-ID 407392

DSM 27924

Other strains from Alistipes timonensis

A. timonensis JC136, DSM 25383, CSUR P148, JCM ... (type strain)

Section

Alistipes timonensis CC-5826-WT-bac is an anaerobe, mesophilic bacterium that was isolated from caecal content; wildtype C57BL/6 mouse.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Rikenellaceae*
	Genus	*Alistipes*
	Species	**Alistipes timonensis**
	Full Scientific Name (LPSN)	Alistipes timonensis Lagier et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #22740]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22740]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #22740]

Culture medium growth

[Ref.: #22740]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22740]

Culture medium composition

expand / minimize

[Ref.: #22740]

Culture medium

FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)

[Ref.: #22740]

Culture medium growth

[Ref.: #22740]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22740]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22740]			growth	37 °C

[Ref.: #22740]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22740]

Oxygen tolerance

anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #22740]	13123	-	-	+	+	-	+	+	-	+/-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #22740]	13094	-	-	+	+	-	-	+	-	-	+/-	-	-	+/-	-	-	+/-	-	-	-	+	-	-	-	-	+	-	-	-	-
[Ref.: #22740]	12479	-	-	+	+	-	-	+	-	-	+/-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22740]	Sample type/isolated from	caecal content; wildtype C57BL/6 mouse
[Ref.: #22740]	Geographic location (country and/or sea, region)	Freising
[Ref.: #22740]	Country	Germany
[Ref.: #22740]	Country ISO 3 Code	DEU
[Ref.: #22740]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Gastrointestinal tract	#Large intestine
#Host Body Product	#Gastrointestinal tract	#Caecal content

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF809885 (>99% sequence identity) for Alistipes timonensis from Microbeatlas

Aquatic Samples	72
Soil Samples	68
Animal Samples	14087
Plant Samples	92
Total Samples	14319

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22740]	Alistipes sp. CC-5826-wt-bac 16S ribosomal RNA gene, partial sequence	KF809885	1432	ENA	1453586 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alistipes timonensis DSM 27924	GCA_024623305	contig	GenBank	1465754 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alistipes timonensis DSM 27924 NCBI: GCA_024623305.1
[Ref.: #69480]	flagellated	no	97.59	no
[Ref.: #69480]	gram-positive	no	98.546	no
[Ref.: #69480]	anaerobic	yes	97.446	yes
[Ref.: #69480]	aerobic	no	95.884	no
[Ref.: #69480]	halophile	no	87.355	no
[Ref.: #69480]	spore-forming	no	95.389	no
[Ref.: #69480]	glucose-ferment	yes	53.909	no
[Ref.: #69480]	thermophile	no	97.872	yes
[Ref.: #69480]	glucose-util	yes	83.6	no
[Ref.: #69480]	motile	no	91.546	no

Availability in culture collections External links

[Ref.: #22740]

Culture collection no.

DSM 27924

[Ref.: #89927]

SI-ID 407392

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22740

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27924

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89927

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407392.1 )

* These data were automatically processed and therefore are not curated

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Alistipes timonensis DSM 27924

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