Name: Nocardia arizonensis W9405
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131505

Type strain:

Species: Nocardia arizonensis

Strain Designation: W9405

Culture col. no.: DSM 45748, CCUG 62754, NBRC 108935, JCM 32219

Strain history: CCUG 62754 <-- B. A. Lasker; CDC, USA; W9405.

NCBI tax ID(s): 1141647 (species)

SI-ID 402796

DSM 45748

Section

Nocardia arizonensis W9405 is a spore-forming, mesophilic human pathogen that was isolated from bronchial wash from a 77 years old female patient.

spore-forming
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Nocardia*
	Species	**Nocardia arizonensis**
	Full Scientific Name (LPSN)	Nocardia arizonensis Lasker et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %91.101

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22732]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #22732]

Culture medium growth

[Ref.: #22732]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22732]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22732]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #22732]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-8(H₄, ω-cycl), MK-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22732]	Sample type/isolated from	bronchial wash from a 77 years old female patient
[Ref.: #22732]	Geographic location (country and/or sea, region)	Arizona
[Ref.: #22732]	Country	USA
[Ref.: #22732]	Country ISO 3 Code	USA
[Ref.: #22732]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	77 year-old female patient from a bronchial wash
[Ref.: #67770]	Geographic location (country and/or sea, region)	AZ
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	-
#Host Body Product	#Oral cavity and Airways	#Bronchial wash

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN678715 (>99% sequence identity) for Nocardia arizonensis from Microbeatlas

Aquatic Samples	21
Soil Samples	44
Animal Samples	36
Plant Samples	26
Total Samples	127

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22732]	Pathogenicity (human)	yes, in single cases
[Ref.: #22732]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22732]	Nocardia arizonensis strain W9405 16S ribosomal RNA gene, partial sequence	JN678715	1439	ENA	1141647 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nocardia arizonensis NBRC 108935	GCA_001618405	contig	GenBank	1141647 tax ID
[Ref.: #67770]	Nocardia arizonensis W9405	GCA_001310275	contig	GenBank	1141647 tax ID
[Ref.: #66792]	Nocardia arizonensis strain NBRC 108935	1141647.5	wgs	PATRIC	1141647 tax ID	*
[Ref.: #66792]	Nocardia arizonensis W9405	2645728039	draft	JGI IMG/M	1141647 tax ID	*
[Ref.: #66792]	Nocardia arizonensis NBRC 108935	2740892223	draft	JGI IMG/M	1141647 tax ID	*

[Ref.: #22732]

GC-content

68.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nocardia arizonensis strain NBRC 108935 PATRIC: 1141647.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nocardia arizonensis strain NBRC 108935 PATRIC: 1141647.5
[Ref.: #69480]	motile	no	94.083	no
[Ref.: #69480]	flagellated	no	98.093	no
[Ref.: #69480]	gram-positive	yes	84.856	no
[Ref.: #69480]	anaerobic	no	98.957	no
[Ref.: #69480]	aerobic	yes	89.442	no
[Ref.: #69480]	halophile	no	94.16	no
[Ref.: #69480]	spore-forming	yes	78.762	no
[Ref.: #69480]	thermophile	no	98.615	no
[Ref.: #69480]	glucose-util	yes	84.48	no
[Ref.: #69480]	glucose-ferment	no	93.177	no

Availability in culture collections External links

[Ref.: #22732]

Culture collection no.

DSM 45748, CCUG 62754, NBRC 108935, JCM 32219

[Ref.: #89921]

SI-ID 402796

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardia bovistercoris sp. nov., an actinobacterium isolated from cow dung.	Zhang X, Zhang L, Yu X, Zhang J, Jiao Y, Ju H, Wang X, Zhao J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.004699	2021	*
Phylogeny	Nocardia arizonensis sp. nov., obtained from human respiratory specimens.	Lasker BA, Bell M, Klenk HP, Schumann P, Brown JM	Antonie Van Leeuwenhoek	10.1007/s10482-015-0566-4	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22732

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45748

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89921

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402796.1 )

* These data were automatically processed and therefore are not curated

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Nocardia arizonensis strain NBRC 108935

Nocardia arizonensis strain NBRC 108935

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