Enterobacter asburiae (DSM 29346, CCM 8546, CIP 110826)

Name: Enterobacter asburiae (DSM 29346, CCM 8546, CIP 110826)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131504

Type strain

Strain Designation JM-458

Culture col. no. DSM 29346 CCM 8546 CIP 110826 LMG 28480 JM-458

NCBI tax ID(s) 61645

Special Collections DSMZ CIP

History <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; JM-458 <- J. McInroy, Department of Entomology and Plant Pathology, Auburn University, Alabama, USA; JM-458 CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain JM-458

Links

Enterobacter asburiae JM-458 is a Gram-negative, motile, rod-shaped bacterium that was isolated from rhizosphere of 1-week-old corn plant Zea mays, cultivar 'Sweet Belle'.

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402445

LMG 28480,DSM 29346,CIP 110826,CCUG 73599T

@ref 20215

Last LPSN update 2026-02-09 11:31:28

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Enterobacter

Species Enterobacter asburiae

Full scientific name Enterobacter asburiae Brenner et al. 1988

Synonyms (1)

Enterobacter muelleri

BacDive ID	Other strains from **Enterobacter asburiae** (18)	Type strain
4374	E. asburiae DSM 17506, ATCC 35953, CCUG 25714, CDC 1497-78, ... (type strain)
23923	E. asburiae WS 10107, DSM 30058
134474	E. asburiae 94-8752, CIP 105006
134475	E. asburiae 93-8128, CIP 105007
135170	E. asburiae CIP 66.35
136798	E. asburiae CIP 105879
137591	E. asburiae CIP 79.33
143707	E. asburiae CCUG 21119
144150	E. asburiae CCUG 23173
145793	E. asburiae CCUG 29600
146247	E. asburiae CCUG 30699
146248	E. asburiae CCUG 30700
147475	E. asburiae CCUG 33652
149587	E. asburiae CCUG 38016
152070	E. asburiae CCUG 45687
155486	E. asburiae CCUG 57855
159472	E. asburiae WB01-D5-07-AE, DSM 105330
160605	E. asburiae 105851, DSM 105851

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
125439	negative			99.1
121169	negative	rod-shaped

Multimedia

@ref:	22731
multimedia content:	DSM_29346.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_29346.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
22731	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
41949	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121169	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
22731	positive	growth	28
41949	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	93.1

Spore formation

@ref	Spore formation	Confidence
125439		97.5

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	+	fermentation	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
22731	+	+	-	-	+	-	-	-	-	+	-	+	+	+	+	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
22731	+	+	-	-	+	-	-	-	-	+	-	+	+	+	+	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
22731	rhizosphere of 1-week-old corn plant Zea mays, cultivar 'Sweet Belle'	Zea mays	Alabama, Elmore county, Tallassee, E.V. Smith Research Center	USA	USA	North America
121169	Environment, Soil, rhizosphere		Alabama	United States of America	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22731	1	Risk group (German classification)
121169	2	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Enterobacter_muelleri_JM-458T.fasta assembly for Enterobacter asburiae	contig	GCA_900180435	1646339.4	2791355289	61645	66.12

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22731	Enterobacter muelleri strain JM-458 16S ribosomal RNA gene, partial sequence	KP345900	1422		61645

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Enterobacter asburiae JM-458
IMG: 2791355289

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.50	no
125439	motility	BacteriaNetⓘ	yes	68.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	93.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Antibacterial Potential of Microwave-Assisted Extraction Prepared Hydrolates from Different Salvia Species.	Urgeova E, Uvackova L, Vanekova M, Maliar T.	Plants (Basel)	10.3390/plants12061325	2023
	Natural Compounds of Salvia L. Genus and Molecular Mechanism of Their Biological Activity.	Zhumaliyeva G, Zhussupova A, Zhusupova GE, Blonska-Sikora E, Cerreto A, Omirbekova N, Zhunusbayeva Z, Gemejiyeva N, Ramazanova M, Wrzosek M, Ross SA.	Biomedicines	10.3390/biomedicines11123151	2023
Phylogeny	Enterobacter muelleri sp. nov., isolated from the rhizosphere of Zea mays.	Kampfer P, McInroy JA, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijsem.0.000547	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22731	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29346
#41949	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#121169	Collection of Institut Pasteur ; Curators of the CIP; CIP 110826
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Enterobacter asburiae (DSM 29346, CCM 8546, CIP 110826)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900180435

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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