Name: Hymenobacter mucosus DSM 28041
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131501

Type strain:

Species: Hymenobacter mucosus

Culture col. no.: DSM 28041, KCTC 32567, YIM 77969, JCM 19647

Strain history: <- Wen-Jun Li, Yunnan Inst. Microbiol.

NCBI tax ID(s): 1411120 (species)

SI-ID 408027

DSM 28041

Special Collections

Section

Hymenobacter mucosus DSM 28041 is an aerobe, rod-shaped bacterium that was isolated from soil.

rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter mucosus**
	Full Scientific Name (LPSN)	Hymenobacter mucosus Liu et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %94.451

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22728]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22728]

Culture medium growth

[Ref.: #22728]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22728]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #22728]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %90.958

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #67771]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22728]	Sample type/isolated from	soil
[Ref.: #22728]	Geographic location (country and/or sea, region)	Yunnan province, Yiliang county, Jiuxiang cave
[Ref.: #22728]	Country	China
[Ref.: #22728]	Country ISO 3 Code	CHN
[Ref.: #22728]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil of Jiuxiang cave in Yiliang County
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil, Jiuxiang cave, a tourism cave
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yiliang county, Yunnan province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB859259 (>99% sequence identity) for Hymenobacter mucosus subclade from Microbeatlas

Aquatic Samples	387
Soil Samples	378
Animal Samples	1199
Plant Samples	236
Total Samples	2200

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22728]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22728]	Hymenobacter mucosus gene for 16S ribosomal RNA, partial sequence	AB859259	1540	GenBank ENA	1411120 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hymenobacter mucosus DSM 28041	GCA_900188255	contig	GenBank ENA	1411120 tax ID
[Ref.: #66792]	Hymenobacter mucosus strain DSM 28041	1411120.3	wgs	PATRIC	1411120 tax ID	*
[Ref.: #66792]	Hymenobacter mucosus DSM 28041	2724679735	draft	JGI IMG/M	1411120 tax ID	*

[Ref.: #67771]

GC-content

55.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Hymenobacter mucosus strain DSM 28041 PATRIC: 1411120.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hymenobacter mucosus strain DSM 28041 PATRIC: 1411120.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	94.451	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.352	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	84.528	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.958	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.677	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.75	yes

Availability in culture collections External links

[Ref.: #22728]

Culture collection no.

DSM 28041, KCTC 32567, YIM 77969, JCM 19647

[Ref.: #89917]

SI-ID 408027

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter mucosus sp. nov., isolated from a karst cave soil sample.	Liu L, Zhou EM, Jiao JY, Manikprabhu D, Ming H, Huang MJ, Yin YR, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000550	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22728

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28041

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89917

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408027.1 )

* These data were automatically processed and therefore are not curated

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Hymenobacter mucosus strain DSM 28041

Hymenobacter mucosus strain DSM 28041

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