Alkalihalobacillus hemicentroti (DSM 23007, KCTC 13710, JSM 076093)

Name: Alkalihalobacillus hemicentroti (DSM 23007, KCTC 13710, JSM 076093)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1315

Type strain

Culture col. no. DSM 23007 KCTC 13710 JSM 076093

NCBI tax ID(s) 208199

Special Collections DSMZ KCTC

History <- S.-K. Tang and Y.-G. Chen, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; JSM 076093 <- Y.-G. Chen and Q.-H. Chen

Links

Alkalihalobacillus hemicentroti DSM 23007 is a bacterium that was isolated from sea urchin .

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406178

KCTC 13710,DSM 23007

@ref 20215

Last LPSN update 2026-02-09 11:18:04

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Alkalihalobacillus

Species Alkalihalobacillus hemicentroti

Full scientific name Alkalihalobacillus hemicentroti corrig. (Chen et al. 2011) Patel and Gupta 2020

Synonyms (4)

"Pseudalkalibacillus hemicentroti"
Guptibacillus hemicentroti
Alkalihalobacillus haemicentroti
Bacillus hemicentroti

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16647	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l MnSO4 0.01 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16647	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.9

Spore formation

@ref	Spore formation	Confidence
125439		92.7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Echinodermata

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
16647	sea urchin (Hemicentrotus pulcherrimus)	Hemicentrotus pulcherrimus	Guangdong Province, Naozhou Island (20° 52–56' N 110° 33–38' E)	China	CHN	Asia	20.9167	110.583 20.9167/110.583

Taxonmaps

69479

Global distribution of 16S sequence HM460885 (>99% sequence identity) for Alkalihalobacillus hemicentroti from Microbeatlas

Aquatic Samples
Soil Samples
Animal Samples	1
Plant Samples
Total Samples	1

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16647	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM3081522v1 assembly for Guptibacillus hwajinpoensis JSM 076093	contig	GCA_030815225	582442.4	2928982271	582442	74.91
124043	ASM3040405v1 assembly for Guptibacillus hwajinpoensis DSM 23007	scaffold	GCA_030404055	582442.3	8049262160	208199	72.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16647	Bacillus hemicentroti strain JSM 076093 16S ribosomal RNA gene, partial sequence	HM460885	1482		582442

GC content

@ref	GC-content (mol%)	Method
16647	38.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacillus hemicentroti DSM 23007
IMG: 2928982271

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	92.70	no
125439	motility	BacteriaNetⓘ	yes	89.40	no
125439	gram_stain	BacteriaNetⓘ	variable	74.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.90	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomic studies and molecular markers clarifying the evolutionary relationships and classification of Pseudalkalibacillus species: proposal for the family Guptibacillaceae fam. nov. harbouring the genera Guptibacillus gen. nov. and Exobacillus gen. nov.	Bello S, Rudra B, Schellhorn HE.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006757	2025
Phylogeny	Bacillus hemicentroti sp. nov., a moderate halophile isolated from a sea urchin.	Chen YG, Zhang YQ, He JW, Klenk HP, Xiao JQ, Zhu HY, Tang SK, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.026732-0	2011

References

#16647	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23007
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alkalihalobacillus hemicentroti (DSM 23007, KCTC 13710, JSM 076093)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030815225

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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