Halopolyspora algeriensis (DSM 46680, MTCC 12101, H195)

Name: Halopolyspora algeriensis (DSM 46680, MTCC 12101, H195)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131491

Type strain

Strain Designation H195

Culture col. no. DSM 46680 MTCC 12101 H195

NCBI tax ID(s) 1500506

Special Collections DSMZ Literature strains

Links

Halopolyspora algeriensis H195 is a prokaryote that was isolated from soil from a palm grove.

genome sequence 16S sequence

Name and taxonomic classification

SI-ID 404025

CECT 8575,DSM 46680

@ref 20215

Last LPSN update 2025-12-16 10:01:15

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Halopolyspora

Species Halopolyspora algeriensis

Full scientific name Halopolyspora algeriensis (Saker et al. 2015) Lai et al. 2017

Synonyms (1)

Mzabimyces algeriensis

BacDive ID	Other strains from **Halopolyspora algeriensis** (1)	Type strain
131490	H. algeriensis H151, DSM 45969

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	94.6
125438		91.5
125438	positive	92.639

Multimedia

@ref:	22718
multimedia content:	DSM_46680.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46680.jpg
caption:	Medium 1504 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_46680_1.jpg
multimedia.multimedia content:	EM_DSM_46680_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_46680_2.jpg
multimedia.multimedia content:	EM_DSM_46680_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_46680_3.jpg
multimedia.multimedia content:	EM_DSM_46680_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_46680_4.jpg
multimedia.multimedia content:	EM_DSM_46680_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_46680_5.jpg
multimedia.multimedia content:	EM_DSM_46680_5.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Composition
43850	Tryptic soy broth	supplemented with NaCl 100 g/L, KCl 20 g/L, MgCl 2.6H2O 20 g/L, MgSO4.7H2O 5 g/L, K2HPO4 1 g/L
22718	CM-MEDIUM (DSMZ Medium 1504)	Name: CM MEDIUM (DSMZ Medium 1504) Composition: NaCl 150.0 g/l Agar 20.0 g/l MgSO4 x 7 H2O 10.0 g/l Yeast extract 10.0 g/l Peptone 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O Distilled water
22718	GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159)	Name: GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159) Composition: NaCl 100.0 g/l Agar 15.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22718	positive	growth	28	mesophilic
43850	positive	growth	20-45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	92.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43850	NaCl	positive	growth	7-30 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43850	17306 ChEBI	maltose	+	carbon source
43850	37684 ChEBI	mannose	-	carbon source
43850	17268 ChEBI	myo-inositol	-	carbon source
43850	26546 ChEBI	rhamnose	-	carbon source
43850	33942 ChEBI	ribose	-	carbon source
43850	28017 ChEBI	starch	-	hydrolysis
43850	27082 ChEBI	trehalose	-	carbon source
43850	18222 ChEBI	xylose	-	carbon source

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	valine metabolism	100	9 of 9
66794	pentose phosphate pathway	100	11 of 11
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	Entner Doudoroff pathway	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	glycogen metabolism	100	5 of 5
66794	ethanol fermentation	100	2 of 2
66794	aspartate and asparagine metabolism	100	9 of 9
66794	acetate fermentation	100	4 of 4
66794	3-chlorocatechol degradation	100	5 of 5
66794	palmitate biosynthesis	100	22 of 22
66794	L-lactaldehyde degradation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	resorcinol degradation	100	2 of 2
66794	ribulose monophosphate pathway	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	aerobactin biosynthesis	100	1 of 1
66794	formaldehyde oxidation	100	3 of 3
66794	glycine betaine biosynthesis	100	5 of 5
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	flavin biosynthesis	93.33	14 of 15
66794	leucine metabolism	92.31	12 of 13
66794	threonine metabolism	90	9 of 10
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	allantoin degradation	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	propanol degradation	85.71	6 of 7
66794	citric acid cycle	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	vitamin B12 metabolism	85.29	29 of 34
66794	phenylalanine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	purine metabolism	82.98	78 of 94
66794	tryptophan metabolism	81.58	31 of 38
66794	cellulose degradation	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	hydrogen production	80	4 of 5
66794	3-phenylpropionate degradation	80	12 of 15
66794	propionate fermentation	80	8 of 10
66794	gallate degradation	80	4 of 5
66794	4-hydroxyphenylacetate degradation	80	8 of 10
66794	heme metabolism	78.57	11 of 14
66794	tyrosine metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	pyrimidine metabolism	77.78	35 of 45
66794	cyclohexanol degradation	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	gluconeogenesis	75	6 of 8
66794	phenol degradation	75	15 of 20
66794	glycogen biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	proline metabolism	72.73	8 of 11
66794	alanine metabolism	72.41	21 of 29
66794	histidine metabolism	72.41	21 of 29
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	lipid metabolism	70.97	22 of 31
66794	glycolysis	70.59	12 of 17
66794	vitamin B1 metabolism	69.23	9 of 13
66794	non-pathway related	68.42	26 of 38
66794	degradation of pentoses	67.86	19 of 28
66794	d-mannose degradation	66.67	6 of 9
66794	cysteine metabolism	66.67	12 of 18
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	oxidative phosphorylation	65.93	60 of 91
66794	methionine metabolism	65.38	17 of 26
66794	glutathione metabolism	64.29	9 of 14
66794	vitamin B6 metabolism	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	arginine metabolism	62.5	15 of 24
66794	lysine metabolism	61.9	26 of 42
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	urea cycle	61.54	8 of 13
66794	starch degradation	60	6 of 10
66794	creatinine degradation	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	degradation of sugar acids	60	15 of 25
66794	bile acid biosynthesis, neutral pathway	58.82	10 of 17
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	androgen and estrogen metabolism	56.25	9 of 16
66794	cholesterol biosynthesis	54.55	6 of 11
66794	carotenoid biosynthesis	54.55	12 of 22
66794	sulfate reduction	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	chlorophyll metabolism	50	9 of 18
66794	quinate degradation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	myo-inositol biosynthesis	50	5 of 10
66794	degradation of hexoses	50	9 of 18
66794	kanosamine biosynthesis II	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	metabolism of disaccharids	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	coenzyme M biosynthesis	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	ascorbate metabolism	36.36	8 of 22
66794	methanogenesis from CO2	33.33	4 of 12
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	mevalonate metabolism	28.57	2 of 7
66794	d-xylose degradation	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	ginsenoside metabolism	25	4 of 16
66794	carnitine metabolism	25	2 of 8
66794	catecholamine biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	daunorubicin biosynthesis	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Grove (Orchard)
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
22718	soil from a palm grove	Sahara, Ghardaia (32° 27' N, 3° 41' E), Béni-Isguen, Ahbas palm grove	Algeria	DZA	Africa	32.45	3.6833 32.45/3.6833
43850	Saharan soil sample, Algeria	Algerian Sahara	Algeria	DZA	Africa

Taxonmaps

69479

Global distribution of 16S sequence KJ574202 (>99% sequence identity) for Halopolyspora from Microbeatlas

Aquatic Samples	46
Soil Samples	137
Animal Samples	191
Plant Samples	57
Total Samples	431

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22718	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM671657v1 assembly for Halopolyspora algeriensis DSM 46680	contig	GCA_006716575	1500506.4	2818991235	1500506	70.9

Genome browser: GCA_006716575

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22718	Halopolyspora algeriensis strain H195 16S ribosomal RNA gene, partial sequence	KJ574202	1357		1500506

GC content

@ref	GC-content (mol%)
43850	68.2
22718	68.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halopolyspora algeriensis DSM 46680
NCBI: GCA_006716575

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	71.60	no
125439	motility	BacteriaNetⓘ	no	67.00	no
125439	gram_stain	BacteriaNetⓘ	positive	94.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halopolyspora algeriensis strain DSM 46680
PATRIC: 1500506.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.64	no
125438	anaerobic	anaerobicⓘ	no	94.89	no
125438	spore-forming	spore-formingⓘ	yes	76.95	no
125438	aerobic	aerobicⓘ	yes	88.13	no
125438	thermophilic	thermophileⓘ	no	81.09	no
125438	flagellated	motile2+ⓘ	no	91.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Mzabimyces algeriensis Saker et al. 2015 as Halopolyspora algeriensis comb. nov.	Lai H, Jiang Y, Saker R, Chen X, Bouras N, Klenk HP, Wei X, Jiang Y, Sabaou N	Int J Syst Evol Microbiol	10.1099/ijsem.0.002022	2017
Phylogeny	Mzabimyces algeriensis gen. nov., sp. nov., a halophilic filamentous actinobacterium isolated from a Saharan soil, and proposal of Mzabimycetaceae fam. nov.	Saker R, Bouras N, Zitouni A, Ghoul M, Rohde M, Schumann P, Sproer C, Sabaou N, Klenk HP	Antonie Van Leeuwenhoek	10.1007/s10482-014-0271-8	2014
Phylogeny	Bounagaea algeriensis gen. nov., sp. nov., an extremely halophilic actinobacterium isolated from a Saharan soil of Algeria.	Meklat A, Bouras N, Mokrane S, Zitouni A, Schumann P, Sproer C, Klenk HP, Sabaou N	Antonie Van Leeuwenhoek	10.1007/s10482-015-0500-9	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22718	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46680
#43850	Hangxian Lai, Yingying Jiang, Rafika Saker, Xiu Chen, Noureddine Bouras, Hans-Peter Klenk, Xiaomin Wei, Yi Jiang, Nasserdine Sabaou: Reclassification of Mzabimyces algeriensis Saker et al. 2015 as Halopolyspora algeriensis comb. nov.. IJSEM 67: 2787 - 2790 2017 ( DOI 10.1099/ijsem.0.002022 , PubMed 28820085 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halopolyspora algeriensis (DSM 46680, MTCC 12101, H195)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_006716575

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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