Pseudonocardia nematodicida (DSM 45940, CGMCC 4.7118, HA 11164)

Name: Pseudonocardia nematodicida (DSM 45940, CGMCC 4.7118, HA 11164)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131485

Type strain

Strain Designation HA 11164

Culture col. no. DSM 45940 CGMCC 4.7118 HA 11164 JCM 31783

NCBI tax ID(s) 1206997

Special Collections DSMZ JCM

History DSMZ <- H. Huang, Chinese Acad. Tropical Agricult. Sci., Haikou, China; HA 11164 <- H. Wei JCM <-- CGMCC 4.7118 <-- H.-Q. Huang; Inst. of Trop. Biosci. & Biotechnol., China; HA11164.

Links

Pseudonocardia nematodicida HA 11164 is a bacterium that was isolated from mangrove soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 407966

JCM 31783,DSM 45940

@ref 20215

Last LPSN update 2026-05-29 08:37:37

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Pseudonocardia

Species Pseudonocardia nematodicida

Full scientific name Pseudonocardia nematodicida Liu et al. 2015

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22712	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22712	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.901

Spore formation

@ref	Spore formation	Confidence
125439		93.354

Observation

67770

Observationquinones: MK-8(H₄)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
22712	mangrove soil	Hainan, Dongzhaigang National Nature Reserve (19°57'N, 110°35'E)	China	CHN	Asia	19.95	110.583 19.95/110.583
67770	Mangrove sediment in Dongzhaigang Mangrove Forest	Hainan	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22712	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4010538v1 assembly for Pseudonocardia nematodicida JCM 31783	contig	GCA_040105385	1206997	61.61
124043	ASM4265478v1 assembly for Pseudonocardia nematodicida CGMCC 4.7118	scaffold	GCA_042654785	1206997	52.66

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Pseudonocardia nematodicida strain HA11164 16S ribosomal RNA gene, partial sequence	JX067939	1481		1206997

GC content

@ref	GC-content (mol%)	Method
22712	74.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4010538v1 assembly for Pseudonocardia nematodicida JCM 31783
NCBI: GCA_040105385

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.90	no
125439	gram_stain	BacteriaNetⓘ	positive	74.31	no
125439	spore_formation	BacteriaNetⓘ	no	93.35	no
125439	motility	BacteriaNetⓘ	no	65.79	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudonocardia nematodicida sp. nov., isolated from mangrove sediment in Hainan, China.	Liu M, Xing SS, Yuan WD, Wei H, Sun QG, Lin XZ, Huang HQ, Bao SX	Antonie Van Leeuwenhoek	10.1007/s10482-015-0512-5	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22712	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45940
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudonocardia nematodicida (DSM 45940, CGMCC 4.7118, HA 11164)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_040105385

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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