Pseudomonas taetrolens DSM 21104 is an aerobe, Gram-negative, motile bacterium that was isolated from musty egg.
Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Pseudomonadaceae |
| Genus Pseudomonas |
| Species Pseudomonas taetrolens |
| Full scientific name Pseudomonas taetrolens Haynes 1957 (Approved Lists 1980) |
| BacDive ID | Other strains from Pseudomonas taetrolens (2) | Type strain |
|---|---|---|
| 151022 | P. taetrolens CCUG 43065 B | |
| 157042 | P. taetrolens CCUG 69073 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 15555 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 15555 | PSEUDOMONAS AGAR F (DSMZ Medium 907) | Medium recipe at MediaDive | Name: PSEUDOMONAS AGAR F (DSMZ Medium 907) Composition: Agar 15.0 g/l Glycerol 10.0 g/l Proteose peptone 10.0 g/l Tryptone 10.0 g/l MgSO4 1.5 g/l K2HPO4 1.5 g/l Distilled water | ||
| 15555 | Sucrose-Asparagine Medium (DSMZ Medium 1749) | Medium recipe at MediaDive | Name: Sucrose-Asparagine Medium (DSMZ Medium 1749) Composition: Sucrose 20.0 g/l Agar 15.0 g/l L-Asparagin 2.0 g/l K2HPO4 0.999999 g/l MgSO4 x 7 H2O 0.499999 g/l Tap water | ||
| 34242 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 123413 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 95.8 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 29016 ChEBI | arginine | + | hydrolysis | from API 20NE |
| 123413 | 16947 ChEBI | citrate | + | carbon source | |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | + | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | + | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | + | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | + | assimilation | from API 20NE |
| 123413 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | + | assimilation | from API 20NE |
| 68369 | 30849 ChEBI | L-arabinose | + | assimilation | from API 20NE |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 123413 | 17632 ChEBI | nitrate | - | reduction | |
| 123413 | 17632 ChEBI | nitrate | - | respiration | |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 123413 | 16301 ChEBI | nitrite | - | reduction | |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 123413 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 123413 | alcohol dehydrogenase | + | 1.1.1.1 | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 123413 | amylase | - | ||
| 68369 | arginine dihydrolase | + | 3.5.3.6 | from API 20NE |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 123413 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68369 | beta-glucosidase | - | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 123413 | caseinase | - | 3.4.21.50 | |
| 123413 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68369 | cytochrome oxidase | + | 1.9.3.1 | from API 20NE |
| 123413 | DNase | - | ||
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 123413 | gelatinase | +/- | ||
| 68369 | gelatinase | - | from API 20NE | |
| 123413 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 123413 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 123413 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 123413 | ornithine decarboxylase | - | 4.1.1.17 | |
| 123413 | oxidase | + | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 123413 | tryptophan deaminase | - | ||
| 123413 | tween esterase | - | ||
| 123413 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Environmental | #Microbial community | - | |
| #Host Body Product | #Urogenital tract | #Egg |
Global distribution of 16S sequence D84027 (>99% sequence identity) for Pseudomonas from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | 43222_B01 assembly for Pseudomonas taetrolens NCTC10697 | complete | 47884 | 98.9 | ||||
| 66792 | 52579_B01 assembly for Pseudomonas taetrolens NCTC8067 | complete | 47884 | 94.69 | ||||
| 66792 | IMG-taxon 2639762632 annotated assembly for Pseudomonas taetrolens BS3652 | contig | 47884 | 79.09 | ||||
| 67770 | G8690 assembly for Pseudomonas taetrolens DSM 21104 | contig | 47884 | 74.69 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 15555 | Pseudomonas taetrolens 16S rRNA gene, complete sequence | D84027 | 1527 | 47884 | ||
| 124043 | Pseudomonas taetrolens gene for 16S rRNA, partial sequence, strain: NBRC 3460. | AB680089 | 1462 | 47884 | ||
| 124043 | Pseudomonas taetrolens culture DSM:21104 16S ribosomal RNA gene, partial sequence. | KX186991 | 1431 | 47884 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 95.80 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 86.90 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 98.80 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 91.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 99.32 | no |
| 125438 | aerobic | aerobicⓘ | yes | 90.36 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 87.19 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.00 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 90.64 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Quantitative Analysis of Lactobionic Acid in Bioreactor Cultures and Selected Biological Activities. | Goderska K, Juzwa W, Karpinski TM. | Molecules | 10.3390/molecules29225400 | 2024 | ||
| Chemical Versus Biological Approaches to the Synthesis of Lactobionic Acid: A Review | Piatek-Golda W, Osinska-Jaroszuk M, Pawlik A, Komon-Janczara E, Sulej J. | Molecules | 2025 | |||
| Biosynthesis of Lactobionic Acid in Whey-Containing Medium by Microencapsulated and Free Bacteria of Pseudomonas taetrolens. | Goderska K. | Indian J Microbiol | 10.1007/s12088-021-00944-4 | 2021 | ||
| The Impact of Biotechnologically Produced Lactobionic Acid on Laying Hens' Productivity and Egg Quality during Early Laying Period. | Zagorska J, Ruska D, Radenkovs V, Juhnevica-Radenkova K, Kince T, Galoburda R, Gramatina I. | Animals (Basel) | 10.3390/ani14202966 | 2024 | ||
| Genetics | Comprehensive genome analysis of Pseudomonas sp. SWRIQ11, a new plant growth-promoting bacterium that alleviates salinity stress in olive. | Zamanzadeh-Nasrabadi SM, Mohammadiapanah F, Sarikhan S, Shariati V, Saghafi K, Hosseini-Mazinani M. | 3 Biotech | 10.1007/s13205-023-03755-0 | 2023 | |
| Metabolism | The utilization of Pseudomonas taetrolens to produce lactobionic acid. | Goderska K, Szwengiel A, Czarnecki Z. | Appl Biochem Biotechnol | 10.1007/s12010-014-1024-x | 2014 | |
| Enzymology | High-level production of maltobionic acid from high-maltose corn syrup by genetically engineered Pseudomonas taetrolens. | Oh YR, Jang YA, Hong SH, Eom GT. | Biotechnol Rep (Amst) | 10.1016/j.btre.2020.e00558 | 2020 | |
| Enzymology | BactQuant: an enhanced broad-coverage bacterial quantitative real-time PCR assay. | Liu CM, Aziz M, Kachur S, Hsueh PR, Huang YT, Keim P, Price LB. | BMC Microbiol | 10.1186/1471-2180-12-56 | 2012 | |
| Metabolism | Taxonomic significance of phenethyl alcohol production by Achromobacter isolates from fishery sources. | Chen TC, Levin RE. | Appl Microbiol | 10.1128/am.28.4.681-687.1974 | 1974 | |
| Metabolism | Production of lysozyme by staphylococci and its correlation with three other extracellular substances. | Jay JM. | J Bacteriol | 10.1128/jb.91.5.1804-1810.1966 | 1966 | |
| Bio-production of lactic and lactobionic acids using whey from the production of cow's milk Wagashi cheese in Benin. | Djobo O, Sina H, Tagba S, Ahyi V, Savadogo A, Adjanohoun A, Rendueles M, Baba-Moussa L. | Front Nutr | 10.3389/fnut.2022.1020934 | 2022 | ||
| Downstream Approach Routes for the Purification and Recovery of Lactobionic Acid. | Sarenkova I, Saez-Orviz S, Rendueles M, Ciprovica I, Zagorska J, Diaz M. | Foods | 10.3390/foods11040583 | 2022 | ||
| Edible films from residual delipidated egg yolk proteins. | Marcet I, Saez S, Rendueles M, Diaz M. | J Food Sci Technol | 10.1007/s13197-017-2861-8 | 2017 | ||
| Enzymology | Development of a multiplex real-time PCR assay for the simultaneous detection of four bacterial pathogens causing pneumonia. | Lim HJ, Kang ER, Park MY, Kim BK, Kim MJ, Jung S, Roh KH, Sung N, Yang JH, Lee MW, Lee SH, Yang YJ. | PLoS One | 10.1371/journal.pone.0253402 | 2021 | |
| Enzymology | Distribution of aldoxime dehydratase in microorganisms. | Kato Y, Ooi R, Asano Y. | Appl Environ Microbiol | 10.1128/aem.66.6.2290-2296.2000 | 2000 | |
| Preparation of Edible Films with Lactobacillus plantarum and Lactobionic Acid Produced by Sweet Whey Fermentation. | Saez-Orviz S, Marcet I, Rendueles M, Diaz M | Membranes (Basel) | 10.3390/membranes12020115 | 2022 | ||
| Metabolism | Exploring encapsulation strategies as a protective mechanism to avoid amensalism in mixed populations of Pseudomonas taetrolens and Lactobacillus casei. | Garcia C, Ranieri G, Rendueles M, Diaz M | Bioprocess Biosyst Eng | 10.1007/s00449-019-02204-8 | 2019 | |
| Enzymology | Detection and function of the intramolecular disulfide bond in arginine racemase: an enzyme with broad substrate specificity. | Matsui D, Oikawa T | Chem Biodivers | 10.1002/cbdv.200900258 | 2010 | |
| Metabolism | Regulation of pyrimidine nucleotide formation in Pseudomonas taetrolens ATCC 4683. | West TP | Microbiol Res | 10.1016/j.micres.2004.01.007 | 2004 |
| #15555 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21104 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #34242 | ; Curators of the CIP; |
| #44234 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 560 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68369 | Automatically annotated from API 20NE . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #123413 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103299 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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