Name: Microbacterium nanhaiense OAcT-400
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131477

Type strain:

Species: Microbacterium nanhaiense

Strain Designation: OAcT-400

Culture col. no.: DSM 26811, CGMCC 4.7181, KCTC 29185

Strain history: <- Jing Li

NCBI tax ID(s): 1301026 (species)

SI-ID 407069

DSM 26811

Section

Microbacterium nanhaiense OAcT-400 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from sea sediment.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium nanhaiense**
	Full Scientific Name (LPSN)	Microbacterium nanhaiense Yan et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22704]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22704]

Culture medium growth

[Ref.: #22704]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22704]

Culture medium composition

expand / minimize

[Ref.: #22704]

Culture medium

OXOID NUTRIENT BROTH (DSMZ Medium 948)

[Ref.: #22704]

Culture medium growth

[Ref.: #22704]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22704]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22704]			growth	28 °C
[Ref.: #67771]			growth	28 °C

[Ref.: #22704]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22704]	Sample type/isolated from	sea sediment
[Ref.: #22704]	Geographic location (country and/or sea, region)	South China Sea, site N42-5 at a depth of 2093 m
[Ref.: #22704]	Country	China
[Ref.: #22704]	Country ISO 3 Code	CHN
[Ref.: #22704]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From sediment in South China sea(depth 2093m)
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC505174 (>99% sequence identity) for Microbacterium from Microbeatlas

Aquatic Samples	62
Soil Samples	83
Animal Samples	474
Plant Samples	36
Total Samples	655

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22704]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22704]	Microbacterium nanhaiense strain OAct400 16S ribosomal RNA gene, partial sequence	KC505174	1446	ENA	1301026 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbacterium nanhaiense CGMCC 4.7181	GCA_014646015	contig	GenBank	1301026 tax ID	*
[Ref.: #66792]	Microbacterium nanhaiense strain CGMCC 4.7181	1301026.3	wgs	PATRIC	1301026 tax ID	*

[Ref.: #22704]

GC-content

73.8 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbacterium nanhaiense strain CGMCC 4.7181 PATRIC: 1301026.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbacterium nanhaiense strain CGMCC 4.7181 PATRIC: 1301026.3
[Ref.: #69480]	motile	no	93.989	no
[Ref.: #69480]	gram-positive	yes	94.643	no
[Ref.: #69480]	anaerobic	no	99.524	no
[Ref.: #69480]	halophile	no	76.774	no
[Ref.: #69480]	spore-forming	no	93.299	no
[Ref.: #69480]	thermophile	no	99.385	yes
[Ref.: #69480]	glucose-util	yes	85.696	no
[Ref.: #69480]	flagellated	no	96.982	no
[Ref.: #69480]	aerobic	yes	88.189	yes
[Ref.: #69480]	glucose-ferment	no	74.032	no

Availability in culture collections External links

[Ref.: #22704]

Culture collection no.

DSM 26811, CGMCC 4.7181, KCTC 29185

[Ref.: #89894]

SI-ID 407069

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium nanhaiense sp. nov., an actinobacterium isolated from sea sediment.	Yan L, Wang J, Chen Z, Guan Y, Li J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000480	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22704

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26811

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89894

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407069.1 )

* These data were automatically processed and therefore are not curated

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Microbacterium nanhaiense strain CGMCC 4.7181

Microbacterium nanhaiense strain CGMCC 4.7181

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