Name: Vogesella amnigena BRCR 80887
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131464

Type strain:

Species: Vogesella amnigena

Strain Designation: BRCR 80887, Npb-02

Culture col. no.: DSM 100847, KCTC 42195, LMG 28419

Strain history: <- LMG <- W.-M. Chen, National Kaohsiung Marine University, Taiwan; Npb-02

NCBI tax ID(s): 1507449 (species)

SI-ID 396454

LMG 28419, BCRC 80887, KCTC 42195

Special Collections

DSMZ
KCTC

Section

Vogesella amnigena BRCR 80887 is a bacterium that was isolated from freshwater from a river.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Chromobacteriaceae*
	Genus	*Vogesella*
	Species	**Vogesella amnigena**
	Full Scientific Name (LPSN)	Vogesella amnigena Chen et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22691]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)

[Ref.: #22691]

Culture medium growth

[Ref.: #22691]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22691]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22691]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	+	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	yes	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	+	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #22691]	23530	+	+	-	-	-	-	-	-	+	-	-	-	+	-	-	+	-	+	-	-	+
[Ref.: #22691]	23528	+	+	-	-	-	-	-	-	+	-	-	-	+	-	-	+	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22691]	Sample type/isolated from	freshwater from a river
[Ref.: #22691]	Geographic location (country and/or sea, region)	Beishi River near Pingtung (22° 22' 13'' N 120° 35' 31'' E)
[Ref.: #22691]	Country	Taiwan, Province of China
[Ref.: #22691]	Country ISO 3 Code	TWN
[Ref.: #22691]	Continent	Asia
[Ref.: #22691]	Geographic location	22.3703°/120.5920°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LK056648 (>99% sequence identity) for Vogesella amnigena subclade from Microbeatlas

Aquatic Samples	747
Soil Samples	174
Animal Samples	98
Plant Samples	56
Total Samples	1075

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22691]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22691]	Vogesella amnigena partial 16S rRNA gene, type strain Npb-02T	LK056648	1403	GenBank ENA	1507449 tax ID

[Ref.: #22691]

GC-content

64.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #22691]

Culture collection no.

DSM 100847, KCTC 42195, LMG 28419

[Ref.: #89883]

SI-ID 396454

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vogesella amnigena sp. nov., isolated from a freshwater river.	Chen WM, Chen JC, Wang C, Huang CW, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.000467	2015	*
Phylogeny	Vogesella facilis sp. nov., isolated from a freshwater river, and emended description of the genus Vogesella.	Sheu SY, Chen YL, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.000797	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22691

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100847

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89883

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396454.1 )

* These data were automatically processed and therefore are not curated

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