Name: Domibacillus tundrae DSM 29572
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131463

Type strain:

Species: Domibacillus tundrae

Culture col. no.: DSM 29572, JCM 30371, KCTC 33549, PAMC 80007

Strain history: H. R. Gyeong; KOPRI, South Korea; PAMC 80007.

NCBI tax ID(s): 1587527 (species)

SI-ID 400438

DSM 29572

Section

Domibacillus tundrae DSM 29572 is a mesophilic bacterium that was isolated from active layer soil from moist acidic tussock tundra.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Domibacillus*
	Species	**Domibacillus tundrae**
	Full Scientific Name (LPSN)	Domibacillus tundrae Gyeong et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22690]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #22690]

Culture medium growth

[Ref.: #22690]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22690]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22690]			growth	30 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #22690]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-6, MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22690]	Sample type/isolated from	active layer soil from moist acidic tussock tundra
[Ref.: #22690]	Geographic location (country and/or sea, region)	Alaska, Council (64.50765° N 163.42696° W)
[Ref.: #22690]	Country	USA
[Ref.: #22690]	Country ISO 3 Code	USA
[Ref.: #22690]	Continent	North America
[Ref.: #22690]	Geographic location	64.5076°/-163.4270°

[Ref.: #67770]	Sample type/isolated from	Active layer soil of Council
[Ref.: #67770]	Geographic location (country and/or sea, region)	Alaska
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Acidic	-
#Condition	#Psychrophilic (<10°C)	-
#Climate	#Cold	#Tundra

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22690]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22690]	Domibacillus tundrae strain PAMC 80007 16S ribosomal RNA gene, partial sequence	KM657429	1482	ENA	1587527 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Domibacillus tundrae PAMC 80007	GCA_000970675	contig	GenBank	1587527 tax ID

[Ref.: #22690]	GC-content	43.5 mol%	sequence analysis
[Ref.: #67770]	GC-content	43.5 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Domibacillus tundrae PAMC 80007 NCBI: GCA_000970675.1
[Ref.: #69480]	motile	yes	89.585	no
[Ref.: #69480]	flagellated	yes	88.653	no
[Ref.: #69480]	gram-positive	yes	92.187	no
[Ref.: #69480]	anaerobic	no	98.877	no
[Ref.: #69480]	aerobic	yes	95.52	no
[Ref.: #69480]	halophile	no	86.265	no
[Ref.: #69480]	spore-forming	yes	88.332	no
[Ref.: #69480]	thermophile	no	93.833	no
[Ref.: #69480]	glucose-util	yes	89.457	no
[Ref.: #69480]	glucose-ferment	no	91.258	no

Availability in culture collections External links

[Ref.: #22690]

Culture collection no.

DSM 29572, JCM 30371, KCTC 33549, PAMC 80007

[Ref.: #89882]

SI-ID 400438

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Domibacillus antri sp. nov., isolated from the soil of a cave.	Xu D, Wang L, Wang G, Zheng S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001080	2016	*
Phylogeny	Domibacillus tundrae sp. nov., isolated from active layer soil of tussock tundra in Alaska, and emended description of the genus Domibacillus.	Gyeong HR, Baek K, Hwang CY, Park KH, Kim HM, Lee HK, Lee YK	Int J Syst Evol Microbiol	10.1099/ijsem.0.000429	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22690

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29572

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89882

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400438.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Domibacillus tundrae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Domibacillus tundrae PAMC 80007

Change proposal

Change proposal