Domibacillus tundrae (DSM 29572, JCM 30371, KCTC 33549)

Name: Domibacillus tundrae (DSM 29572, JCM 30371, KCTC 33549)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131463

Type strain

Culture col. no. DSM 29572 JCM 30371 KCTC 33549 PAMC 80007

NCBI tax ID(s) 1587527

Special Collections DSMZ JCM KCTC

History DSMZ <- HyeRyeon Gyeong, Korea Polar Research Institute, Incheon; PAMC 80007 JCM <-- H. R. Gyeong; KOPRI, South Korea; PAMC 80007.

Links

Domibacillus tundrae DSM 29572 is a bacterium that was isolated from active layer soil from moist acidic tussock tundra.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400438

KCTC 33549,JCM 30371,DSM 29572

@ref 20215

Last LPSN update 2026-05-29 08:37:37

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Domibacillus

Species Domibacillus tundrae

Full scientific name Domibacillus tundrae Gyeong et al. 2015

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22690	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22690	positive	growth	30
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.46

Spore formation

@ref	Spore formation	Confidence
125439		94.427

Observation

67770

Observationquinones: MK-6, MK-7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Condition	#Acidic	-
#Condition	#Psychrophilic (<10°C)	-
#Climate	#Cold	#Tundra

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
22690	active layer soil from moist acidic tussock tundra	Alaska, Council (64.50765° N 163.42696° W)	USA	USA	North America	64.5076	-163.427 64.5076/-163.427
67770	Active layer soil of Council	Alaska	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22690	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
67770	ASM97067v1 assembly for Domibacillus tundrae PAMC 80007	contig	GCA_000970675	2630968600	1587527	69.22

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22690	Domibacillus tundrae strain PAMC 80007 16S ribosomal RNA gene, partial sequence	KM657429	1482		1587527

GC content

@ref	GC-content (mol%)	Method
22690	43.5	sequence analysis
67770	43.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM97067v1 assembly for Domibacillus tundrae PAMC 80007
NCBI: GCA_000970675

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.46	no
125439	motility	BacteriaNetⓘ	yes	83.19	no
125439	gram_stain	BacteriaNetⓘ	variable	70.21	no
125439	spore_formation	BacteriaNetⓘ	yes	94.43	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Domibacillus tundrae PAMC 80007
NCBI: GCA_000970675.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	76.73	no
125438	anaerobic	anaerobicⓘ	no	93.04	no
125438	aerobic	aerobicⓘ	yes	77.95	no
125438	spore-forming	spore-formingⓘ	yes	89.66	no
125438	thermophilic	thermophileⓘ	no	87.78	yes
125438	flagellated	motile2+ⓘ	yes	77.65	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Domibacillus antri sp. nov., isolated from the soil of a cave.	Xu D, Wang L, Wang G, Zheng S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001080	2016
Phylogeny	Domibacillus tundrae sp. nov., isolated from active layer soil of tussock tundra in Alaska, and emended description of the genus Domibacillus.	Gyeong HR, Baek K, Hwang CY, Park KH, Kim HM, Lee HK, Lee YK	Int J Syst Evol Microbiol	10.1099/ijsem.0.000429	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22690	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29572
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Domibacillus tundrae (DSM 29572, JCM 30371, KCTC 33549)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000970675

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media