Name: Deinococcus metalli 1PNM-19
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131460

Type strain:

Species: Deinococcus metalli

Strain Designation: 1PNM-19

Culture col. no.: DSM 27521, GIMCC 1.654, GIMCC 1.660

Strain history: <- G. Feng, Guangdong Inst. Microbiology, Guangzhou, China; 1PNM-19

NCBI tax ID(s): 1141878 (species)

SI-ID 404106

DSM 27521

Section

Deinococcus metalli 1PNM-19 is a mesophilic bacterium that was isolated from lead-zinc ore from an abandoned lead-zinc mine.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus metalli**
	Full Scientific Name (LPSN)	Deinococcus metalli Feng et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %93.706

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22687]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22687]

Culture medium growth

[Ref.: #22687]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22687]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22687]			growth	28 °C

[Ref.: #22687]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.788

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22687]	Sample type/isolated from	lead-zinc ore from an abandoned lead-zinc mine
[Ref.: #22687]	Geographic location (country and/or sea, region)	Guangdong Province, Meizhou (24° 21' 44'' N 116° 16' 34'' E)
[Ref.: #22687]	Country	China
[Ref.: #22687]	Country ISO 3 Code	CHN
[Ref.: #22687]	Continent	Asia
[Ref.: #22687]	Geographic location	24.3622°/116.2760°
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22687]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22687]	Deinococcus metalli strain 1PNM-19 16S ribosomal RNA gene, partial sequence	JQ608330	1466	ENA	1141878 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Deinococcus metalli DSM 27521	GCA_014201805	contig	GenBank	1141878 tax ID	*
[Ref.: #66792]	Deinococcus metalli strain DSM 27521	1141878.3	wgs	PATRIC	1141878 tax ID	*
[Ref.: #66792]	Deinococcus metalli DSM 27521	2861276540	draft	JGI IMG/M	1141878 tax ID	*

[Ref.: #22687]

GC-content

71.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Deinococcus metalli strain DSM 27521 PATRIC: 1141878.3
[Ref.: #69481]	spore-forming	no	69	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Deinococcus metalli strain DSM 27521 PATRIC: 1141878.3
[Ref.: #69480]	motile	no	90.002	no
[Ref.: #69480]	flagellated	no	93.967	no
[Ref.: #69480]	gram-positive	yes	75.364	no
[Ref.: #69480]	anaerobic	no	98.977	no
[Ref.: #69480]	aerobic	yes	92.514	no
[Ref.: #69480]	halophile	no	95.089	no
[Ref.: #69480]	spore-forming	no	92.618	no
[Ref.: #69480]	thermophile	no	93.976	no
[Ref.: #69480]	glucose-util	yes	88.647	no
[Ref.: #69480]	glucose-ferment	no	89.392	no

Availability in culture collections External links

[Ref.: #22687]

Culture collection no.

DSM 27521, GIMCC 1.654, GIMCC 1.660

[Ref.: #89879]

SI-ID 404106

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Deinococcus populi sp. nov. from the trunk surface of a Japanese aspen tree.	Li J, Kudo C, Tonouchi A	Arch Microbiol	10.1007/s00203-017-1443-5	2017	*
Phylogeny	Deinococcus metalli sp. nov., isolated from an abandoned lead-zinc mine.	Feng GD, Wang YH, Li YX, Zhu HH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000439	2015	*
Phylogeny	Deinococcus koreensis sp. nov., a gamma radiation-resistant bacterium isolated from river water.	Baek K, Chung EJ, Choi GG, Kim MK, Lim S, Choi A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002872	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22687

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27521

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89879

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404106.1 )

* These data were automatically processed and therefore are not curated

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Deinococcus metalli strain DSM 27521

Deinococcus metalli strain DSM 27521

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