Name: Okibacterium endophyticum EG1 650022
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131445

Type strain:

Species: Okibacterium endophyticum

Strain Designation: EG1 650022

Culture col. no.: DSM 28749, JCM 30086, KCTC 29492, EGI 650022

Strain history: <- Wenjun Li, Yunnan Univ.

NCBI tax ID(s): 1521118 (species)

SI-ID 405241

DSM 28749

Section

Okibacterium endophyticum EG1 650022 is an aerobe, mesophilic bacterium that was isolated from surface-sterilized root of a healthy halophyte plant .

aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Okibacterium*
	Species	**Okibacterium endophyticum**
	Full Scientific Name (LPSN)	Okibacterium endophyticum Wang et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22672]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #22672]

Culture medium growth

[Ref.: #22672]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22672]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #22672]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #22672]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #67770]

Observation

quinones: MK-12, MK-11, MK-12(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22672]	Sample type/isolated from	surface-sterilized root of a healthy halophyte plant (Salsola affinis C.A. Mey)
[Ref.: #22672]	Host species	Salsola affinis
[Ref.: #22672]	Geographic location (country and/or sea, region)	Xinjiang province, suburban district of Urumqi
[Ref.: #22672]	Country	China
[Ref.: #22672]	Country ISO 3 Code	CHN
[Ref.: #22672]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Roots of a healthy halophyte sample of Salsola affinis C. A. Mey
[Ref.: #67770]	Host species	Salsola affinis
[Ref.: #67770]	Geographic location (country and/or sea, region)	suburban district of Urumqi, Xinjiang Province, north-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From the roots of Salsola affinis C. A. Mey
[Ref.: #67771]	Geographic location (country and/or sea, region)	collected from Urumqi City, Xinjiang
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22672]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22672]	Okibacterium endophyticum strain EGI 650022 16S ribosomal RNA gene, partial sequence	KM114213	1529	ENA	1521118 tax ID

[Ref.: #22672]	GC-content	66.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	66 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #22672]

Culture collection no.

DSM 28749, JCM 30086, KCTC 29492, EGI 650022

[Ref.: #89867]

SI-ID 405241

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Okibacterium endophyticum sp. nov., a novel endophytic actinobacterium isolated from roots of Salsola affinis C. A. Mey.	Wang HF, Zhang YG, Li L, Liu WH, Hozzein WN, Chen JY, Guo JW, Zhang YM, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0376-0	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22672

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28749

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#89867

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405241.1 )

* These data were automatically processed and therefore are not curated

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