Name: Sphingomonas morindae NBD5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131427

Type strain:

Species: Sphingomonas morindae

Strain Designation: NBD5

Culture col. no.: DSM 29151, CICC 10879, KCTC 42183

Strain history: <- Yang Liu, CICC, China.

NCBI tax ID(s): 1541170 (species)

SI-ID 406158

DSM 29151

Other strains from Sphingomonas morindae

S. morindae NBD8, DSM 29152, CICC 10880

Section

Sphingomonas morindae NBD5 is an aerobe, mesophilic bacterium that was isolated from Noni L.; inner tissue of healthy branches, as endophyte.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas morindae**
	Full Scientific Name (LPSN)	Sphingomonas morindae Liu et al. 2015

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #22654]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22654]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #22654]

Culture medium growth

[Ref.: #22654]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22654]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22654]			growth	28 °C
[Ref.: #67771]			growth	30 °C

[Ref.: #22654]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22654]	Sample type/isolated from	Noni (Morinda citrifolia) L.; inner tissue of healthy branches, as endophyte
[Ref.: #22654]	Host species	Morinda citrifolia
[Ref.: #22654]	Geographic location (country and/or sea, region)	Hainan, Sanya, Hainan Noni Biological Engineering Development (18° 18' 01'' N 109° 31' 36'' E)
[Ref.: #22654]	Country	China
[Ref.: #22654]	Country ISO 3 Code	CHN
[Ref.: #22654]	Continent	Asia
[Ref.: #22654]	Geographic location	18.3003°/109.5270°

[Ref.: #67771]	Sample type/isolated from	From Noni(Morinda Citrifolia L.)
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Stem (Branch)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ934256 (>99% sequence identity) for Sphingomonas morindae subclade from Microbeatlas

Aquatic Samples	12
Soil Samples	37
Animal Samples	26
Plant Samples	19
Total Samples	94

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22654]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22654]	Sphingomonas morindae strain NBD5 16S ribosomal RNA gene, partial sequence	KJ934256	1446	ENA	1541170 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingomonas morindae NBD5	GCA_023822065	complete	GenBank	1541170 tax ID	*

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GC-content

67.6 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingomonas morindae NBD5 NCBI: GCA_023822065.1
[Ref.: #69480]	flagellated	no	87.368	no
[Ref.: #69480]	gram-positive	no	96.342	no
[Ref.: #69480]	anaerobic	no	98.805	yes
[Ref.: #69480]	aerobic	yes	91.164	no
[Ref.: #69480]	halophile	no	94.505	no
[Ref.: #69480]	spore-forming	no	94.004	no
[Ref.: #69480]	motile	yes	80.137	no
[Ref.: #69480]	glucose-ferment	no	89.333	no
[Ref.: #69480]	thermophile	no	96.965	no
[Ref.: #69480]	glucose-util	yes	90.823	no

Availability in culture collections External links

[Ref.: #22654]

Culture collection no.

DSM 29151, CICC 10879, KCTC 42183

[Ref.: #89855]

SI-ID 406158

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas morindae sp. nov., isolated from Noni (Morinda citrifolia L.) branch.	Liu Y, Yao S, Lee YJ, Cao Y, Zhai L, Zhang X, Su J, Ge Y, Kim SG, Cheng C	Int J Syst Evol Microbiol	10.1099/ijs.0.000340	2015	*
Phylogeny	Sphingomonas difficilis sp. nov., a difficultly cultivable bacterium that grows on solid but not in liquid medium, isolated from an abandoned lead-zinc mine.	Feng GD, Xiong X, Zhu HH, Li HP	Int J Syst Evol Microbiol	10.1099/ijsem.0.002461	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22654

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29151

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89855

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406158.1 )

* These data were automatically processed and therefore are not curated

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