Name: Pseudoxanthomonas sangjuensis 5GH38-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131424

Type strain:

Species: Pseudoxanthomonas sangjuensis

Strain Designation: 5GH38-5

Culture col. no.: DSM 28345, JCM 19948, KACC 16961

Strain history: S.-W. Kwon 5GH38-5.

NCBI tax ID(s): 1503750 (species)

SI-ID 400443

DSM 28345

Section

Pseudoxanthomonas sangjuensis 5GH38-5 is a mesophilic, Gram-negative bacterium that was isolated from greenhouse soil.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Pseudoxanthomonas*
	Species	**Pseudoxanthomonas sangjuensis**
	Full Scientific Name (LPSN)	Pseudoxanthomonas sangjuensis Kim et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.995

Multimedia content

[Ref.: #22651]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22651]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)

[Ref.: #22651]

Culture medium growth

[Ref.: #22651]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22651]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22651]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #22651]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22651]	Sample type/isolated from	greenhouse soil
[Ref.: #22651]	Geographic location (country and/or sea, region)	Sangju region
[Ref.: #22651]	Country	Republic of Korea
[Ref.: #22651]	Country ISO 3 Code	KOR
[Ref.: #22651]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from a greenhouse in Sangju region
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Greenhouse
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22651]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22651]	Pseudoxanthomonas sangjuensis strain 5GH38-5 16S ribosomal RNA gene, partial sequence	KJ607172	1482	ENA	1503750 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudoxanthomonas sangjuensis DSM 28345	GCA_010211755	contig	GenBank	1503750 tax ID
[Ref.: #66792]	Pseudoxanthomonas sangjuensis strain DSM 28345	1503750.3	wgs	PATRIC	1503750 tax ID	*
[Ref.: #66792]	Pseudoxanthomonas sangjuensis DSM 28345	2895519038	draft	JGI IMG/M	1503750 tax ID	*

[Ref.: #22651]

GC-content

71.1 mol%

fluorimetric

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoxanthomonas sangjuensis strain DSM 28345 PATRIC: 1503750.3
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoxanthomonas sangjuensis strain DSM 28345 PATRIC: 1503750.3
[Ref.: #69480]	motile	no	84.532	no
[Ref.: #69480]	gram-positive	no	98.262	no
[Ref.: #69480]	anaerobic	no	99.35	no
[Ref.: #69480]	aerobic	yes	90.601	no
[Ref.: #69480]	halophile	no	94.377	no
[Ref.: #69480]	spore-forming	no	96.11	no
[Ref.: #69480]	thermophile	no	94.872	no
[Ref.: #69480]	glucose-util	yes	92.457	no
[Ref.: #69480]	flagellated	no	97.358	no
[Ref.: #69480]	glucose-ferment	no	88.699	no

Availability in culture collections External links

[Ref.: #22651]

Culture collection no.

DSM 28345, JCM 19948, KACC 16961

[Ref.: #89852]

SI-ID 400443

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoxanthomonas helianthi sp. nov., isolated from roots of Jerusalem artichoke (Helianthus tuberosus).	Kittiwongwattana C, Thawai C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001465	2016	*
Phylogeny	Pseudoxanthomonas sangjuensis sp. nov., isolated from greenhouse soil.	Kim SJ, Ahn JH, Weon HY, Lim JM, Kim SG, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.000395	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22651

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28345

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89852

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400443.1 )

* These data were automatically processed and therefore are not curated

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Pseudoxanthomonas sangjuensis strain DSM 28345

Pseudoxanthomonas sangjuensis strain DSM 28345

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