Novosphingobium gossypii (DSM 29615, CCM 8569, CIP 110884)

Name: Novosphingobium gossypii (DSM 29615, CCM 8569, CIP 110884)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131420

Type strain

Strain Designation JM-1396, JM1396

Culture col. no. DSM 29615 CCM 8569 CIP 110884 LMG 28605 JM-1396 4 more

NCBI tax ID(s) 1604774

Special Collections DSMZ CIP JMRC

History CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain JM1396 DSMZ <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; JM-1396 <- J. McInroy, Department of Entomology and Plant Pathology, Auburn University, Alabama, USA CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain JM1396

Links

Novosphingobium gossypii JM-1396 is a Gram-negative, rod-shaped bacterium that was isolated from healthy internal stem tissue of post-harvest cotton plant .

Gram-negative rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403629

LMG 28605,DSM 29615,CIP 110884

@ref 20215

Last LPSN update 2026-05-29 08:37:36

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Erythrobacteraceae

Genus Novosphingobium

Species Novosphingobium gossypii

Full scientific name Novosphingobium gossypii Kämpfer et al. 2015

Synonyms (1)

Pseudonovosphingobium gossypii

Morphology

Cell morphology

@ref	Gram stain	Confidence	Cell shape
125439	negative	97.513
119714	negative		rod-shaped

Multimedia

@ref:	22647
multimedia content:	DSM_29615.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_29615.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
36530	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
22647	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
119714	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
22647	positive	growth	28
36530	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.355

Spore formation

@ref	Spore formation	Confidence
125439		99.37

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Stem (Branch)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
22647	healthy internal stem tissue of post-harvest cotton plant (Gossypium hirsutum, cultivar DES-119)	Gossypium hirsutum	Alabama, Tallasee (Macon county), Plant Breeding Unit at the E. V. Smith Research Center	USA	USA	North America
119714	Environment, Rhizosphere		Alabama	United States of America	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22647	1	Risk group (German classification)
119714	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	IMG accession	NCBI tax ID	Score	INSDC accession
66792	Novosphingobium gossypii DSM 29615	complete	2829944697	1604774	93.23
124043	ASM5043330v1 assembly for Novosphingobium gossypii DSM 29615	scaffold		1604774	65.98	GCA_050433305

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22647	Novosphingobium gossypii strain JM-1396 16S ribosomal RNA gene, partial sequence	KP657488	1404		1604774
124043	Novosphingobium gossypii strain CCM 8569 16S ribosomal RNA gene, partial sequence.	MT760221	1331		1604774

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM5043330v1 assembly for Novosphingobium gossypii DSM 29615
NCBI: GCA_050433305

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.36	no
125439	motility	BacteriaNetⓘ	yes	57.07	no
125439	gram_stain	BacteriaNetⓘ	negative	97.51	no
125439	spore_formation	BacteriaNetⓘ	no	99.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Novosphingobium guangzhouense sp. nov., with the ability to degrade 1-methylphenanthrene.	Sha S, Zhong J, Chen B, Lin L, Luan T	Int J Syst Evol Microbiol	10.1099/ijsem.0.001669	2017
Phylogeny	Novosphingobium gossypii sp. nov., isolated from Gossypium hirsutum.	Kampfer P, Martin K, McInroy JA, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijs.0.000339	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#22647	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29615
#36530	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#119714	Collection of Institut Pasteur ; Curators of the CIP; CIP 110884
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Novosphingobium gossypii (DSM 29615, CCM 8569, CIP 110884)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_050433305

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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