Name: Novosphingobium gossypii JM-1396
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131420

Type strain:

Species: Novosphingobium gossypii

Strain Designation: JM-1396, JM1396

Culture col. no.: DSM 29615, CCM 8569, CIP 110884, LMG 28605

Strain history: CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain JM1396

NCBI tax ID(s): 1604774 (species)

SI-ID 403629

DSM 29615, CIP 110884

Section

Novosphingobium gossypii JM-1396 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from healthy internal stem tissue of post-harvest cotton plant .

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Novosphingobium*
	Species	**Novosphingobium gossypii**
	Full Scientific Name (LPSN)	Novosphingobium gossypii Kämpfer et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #119714]	Gram stain	negative
[Ref.: #119714]	Cell shape	rod-shaped

Multimedia content

[Ref.: #22647]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36530]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #36530]

Culture medium growth

[Ref.: #36530]

Culture medium composition

expand / minimize

[Ref.: #22647]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #22647]

Culture medium growth

[Ref.: #22647]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22647]

Culture medium composition

expand / minimize

[Ref.: #119714]

Culture medium

CIP Medium 72

[Ref.: #119714]

Culture medium growth

[Ref.: #119714]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #22647]			growth	28 °C
[Ref.: #36530]			growth	30 °C

[Ref.: #22647]	Temperature range	mesophilic
[Ref.: #36530]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22647]	Sample type/isolated from	healthy internal stem tissue of post-harvest cotton plant (Gossypium hirsutum, cultivar DES-119)
[Ref.: #22647]	Host species	Gossypium hirsutum
[Ref.: #22647]	Geographic location (country and/or sea, region)	Alabama, Tallasee (Macon county), Plant Breeding Unit at the E. V. Smith Research Center
[Ref.: #22647]	Country	USA
[Ref.: #22647]	Country ISO 3 Code	USA
[Ref.: #22647]	Continent	North America

[Ref.: #119714]	Sample type/isolated from	Environment, Rhizosphere
[Ref.: #119714]	Geographic location (country and/or sea, region)	Alabama
[Ref.: #119714]	Country	United States of America
[Ref.: #119714]	Country ISO 3 Code	USA
[Ref.: #119714]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Stem (Branch)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22647]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119714]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22647]	Novosphingobium gossypii strain JM-1396 16S ribosomal RNA gene, partial sequence	KP657488	1404	ENA	1604774 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Novosphingobium gossypii DSM 29615	2829944697	draft	JGI IMG/M	1604774 tax ID	*

Availability in culture collections External links

[Ref.: #22647]

Culture collection no.

DSM 29615, CCM 8569, CIP 110884, LMG 28605

[Ref.: #89848]

SI-ID 403629

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Novosphingobium guangzhouense sp. nov., with the ability to degrade 1-methylphenanthrene.	Sha S, Zhong J, Chen B, Lin L, Luan T	Int J Syst Evol Microbiol	10.1099/ijsem.0.001669	2017	*
Phylogeny	Novosphingobium gossypii sp. nov., isolated from Gossypium hirsutum.	Kampfer P, Martin K, McInroy JA, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijs.0.000339	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22647

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29615

#36530 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89848

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403629.1 )

#119714 Collection of Institut Pasteur ; Curators of the CIP; CIP 110884
* These data were automatically processed and therefore are not curated

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